Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_B07
(679 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05443|LUM_BOVIN Lumican precursor (Keratan sulfate prot... 31 2.6
sp|P51885|LUM_MOUSE Lumican precursor (Keratan sulfate prot... 31 3.4
sp|P51884|LUM_HUMAN Lumican precursor (Keratan sulfate prot... 30 5.8
sp|P51886|LUM_RAT Lumican precursor (Keratan sulfate proteo... 29 9.9
sp|O34204|TOP1_FERIS DNA topoisomerase I (Omega-protein) (R... 29 9.9
>sp|Q05443|LUM_BOVIN Lumican precursor (Keratan sulfate proteoglycan) (KSPG) (Corneal
keratan sulfate proteoglycan 37B core protein)
Length = 342
Score = 31.2 bits (69), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 643 EIQKFDISNVCFNLGNIKYKHVKHLN*KPTH 551
E++KFD+ + C LG + Y +KHL H
Sbjct: 289 ELEKFDVKSFCKILGPLSYSKIKHLRLDGNH 319
>sp|P51885|LUM_MOUSE Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
lumican)
Length = 338
Score = 30.8 bits (68), Expect = 3.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 643 EIQKFDISNVCFNLGNIKYKHVKHL 569
E++KFD+ + C LG + Y +KHL
Sbjct: 285 ELEKFDVKSFCKILGPLSYSKIKHL 309
>sp|P51884|LUM_HUMAN Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
lumican)
Length = 338
Score = 30.0 bits (66), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 643 EIQKFDISNVCFNLGNIKYKHVKHL 569
+++KFDI + C LG + Y +KHL
Sbjct: 285 QLEKFDIKSFCKILGPLSYSKIKHL 309
>sp|P51886|LUM_RAT Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
lumican)
Length = 338
Score = 29.3 bits (64), Expect = 9.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 643 EIQKFDISNVCFNLGNIKYKHVKHL 569
+++KFD+ + C LG + Y +KHL
Sbjct: 285 KLEKFDVKSFCKILGPLSYSKIKHL 309
>sp|O34204|TOP1_FERIS DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 699
Score = 29.3 bits (64), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 177 YHLRIVDMGVQLHCPNCK 230
Y L++ G+ LHCPNCK
Sbjct: 608 YKLKVGKYGLYLHCPNCK 625
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,410,776
Number of Sequences: 369166
Number of extensions: 1595346
Number of successful extensions: 3119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)