Planaria EST Database


DrC_02556

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02556
         (610 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11488|GNAT1_HUMAN  Guanine nucleotide-binding protein G(...    37   0.039
sp|P38407|GNAT_XENLA  Guanine nucleotide-binding protein G(t...    37   0.051
sp|P20612|GNAT1_MOUSE  Guanine nucleotide-binding protein G(...    36   0.067
sp|Q28300|GNAT1_CANFA  Guanine nucleotide-binding protein G(...    36   0.067
sp|P04695|GNAT1_BOVIN  Guanine nucleotide-binding protein G(...    36   0.067
sp|P50149|GNAT2_MOUSE  Guanine nucleotide-binding protein G(...    33   0.74 
sp|P19087|GNAT2_HUMAN  Guanine nucleotide-binding protein G(...    33   0.74 
sp|P04696|GNAT2_BOVIN  Guanine nucleotide-binding protein G(...    33   0.74 
sp|P29348|GNAT3_RAT  Guanine nucleotide-binding protein G(t)...    33   0.74 
sp|Q8N787|CR030_HUMAN  Hypothetical protein C18orf30               32   0.97 
>sp|P11488|GNAT1_HUMAN Guanine nucleotide-binding protein G(t), alpha-1 subunit
           (Transducin alpha-1 chain)
          Length = 350

 Score = 37.0 bits (84), Expect = 0.039
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F++ +  Y +V    D V+ +HES+ L+ S C + +    S   F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 266 KKDVFFEKI 274
>sp|P38407|GNAT_XENLA Guanine nucleotide-binding protein G(t), alpha subunit (Transducin
           alpha chain)
          Length = 350

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F++ +  Y +V    D V+ +HES+ L+ S C + +    S   F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 266 KKDVFTEKI 274
>sp|P20612|GNAT1_MOUSE Guanine nucleotide-binding protein G(t), alpha-1 subunit
           (Transducin alpha-1 chain)
          Length = 350

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F++ +  Y +V    D V+ +HES+ L+ S C + +    S   F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 266 KKDVFSEKI 274
>sp|Q28300|GNAT1_CANFA Guanine nucleotide-binding protein G(t), alpha-1 subunit
           (Transducin alpha-1 chain)
          Length = 350

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F++ +  Y +V    D V+ +HES+ L+ S C + +    S   F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 266 KKDVFSEKI 274
>sp|P04695|GNAT1_BOVIN Guanine nucleotide-binding protein G(t), alpha-1 subunit
           (Transducin alpha-1 chain)
          Length = 350

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F++ +  Y +V    D V+ +HES+ L+ S C + +    S   F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 266 KKDVFSEKI 274
>sp|P50149|GNAT2_MOUSE Guanine nucleotide-binding protein G(t), alpha-2 subunit
           (Transducin alpha-2 chain)
          Length = 354

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F + +  Y +V    D V+ +HES+ L+ S C +      S   F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDDEVNRMHESLHLFNSICNHKFFAATSIVLFLN 269

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 270 KKDLFEEKI 278
>sp|P19087|GNAT2_HUMAN Guanine nucleotide-binding protein G(t), alpha-2 subunit
           (Transducin alpha-2 chain)
          Length = 354

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F + +  Y +V    D V+ +HES+ L+ S C +      S   F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDDEVNRMHESLHLFNSICNHKFFAATSIVLFLN 269

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 270 KKDLFEEKI 278
>sp|P04696|GNAT2_BOVIN Guanine nucleotide-binding protein G(t), alpha-2 subunit
           (Transducin alpha-2 chain)
          Length = 354

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F + +  Y +V    D V+ +HES+ L+ S C +      S   F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDDEVNRMHESLHLFNSICNHKFFAATSIVLFLN 269

Query: 400 YKNIYLAQI 374
            K+++  +I
Sbjct: 270 KKDLFEEKI 278
>sp|P29348|GNAT3_RAT Guanine nucleotide-binding protein G(t), alpha-3 subunit (Gustducin
           alpha-3 chain)
          Length = 354

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -1

Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
           K+++ F  ++C +F + +  Y +V    + V+ +HES+ L+ S C + +    S   F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFATTSIVLFLN 269

Query: 400 YKNIYLAQI 374
            K+++  ++
Sbjct: 270 KKDLFQEKV 278
>sp|Q8N787|CR030_HUMAN Hypothetical protein C18orf30
          Length = 583

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 549 CPVVFSYHISIGLSPVPTTSYPW 481
           C + F Y I IG+ P P   YPW
Sbjct: 463 CIITFQYFICIGIPPAPCRDYPW 485
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,555,303
Number of Sequences: 369166
Number of extensions: 1298815
Number of successful extensions: 3716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3716
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)