Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_B03
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11488|GNAT1_HUMAN Guanine nucleotide-binding protein G(... 37 0.039
sp|P38407|GNAT_XENLA Guanine nucleotide-binding protein G(t... 37 0.051
sp|P20612|GNAT1_MOUSE Guanine nucleotide-binding protein G(... 36 0.067
sp|Q28300|GNAT1_CANFA Guanine nucleotide-binding protein G(... 36 0.067
sp|P04695|GNAT1_BOVIN Guanine nucleotide-binding protein G(... 36 0.067
sp|P50149|GNAT2_MOUSE Guanine nucleotide-binding protein G(... 33 0.74
sp|P19087|GNAT2_HUMAN Guanine nucleotide-binding protein G(... 33 0.74
sp|P04696|GNAT2_BOVIN Guanine nucleotide-binding protein G(... 33 0.74
sp|P29348|GNAT3_RAT Guanine nucleotide-binding protein G(t)... 33 0.74
sp|Q8N787|CR030_HUMAN Hypothetical protein C18orf30 32 0.97
>sp|P11488|GNAT1_HUMAN Guanine nucleotide-binding protein G(t), alpha-1 subunit
(Transducin alpha-1 chain)
Length = 350
Score = 37.0 bits (84), Expect = 0.039
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F++ + Y +V D V+ +HES+ L+ S C + + S F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 266 KKDVFFEKI 274
>sp|P38407|GNAT_XENLA Guanine nucleotide-binding protein G(t), alpha subunit (Transducin
alpha chain)
Length = 350
Score = 36.6 bits (83), Expect = 0.051
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F++ + Y +V D V+ +HES+ L+ S C + + S F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 266 KKDVFTEKI 274
>sp|P20612|GNAT1_MOUSE Guanine nucleotide-binding protein G(t), alpha-1 subunit
(Transducin alpha-1 chain)
Length = 350
Score = 36.2 bits (82), Expect = 0.067
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F++ + Y +V D V+ +HES+ L+ S C + + S F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 266 KKDVFSEKI 274
>sp|Q28300|GNAT1_CANFA Guanine nucleotide-binding protein G(t), alpha-1 subunit
(Transducin alpha-1 chain)
Length = 350
Score = 36.2 bits (82), Expect = 0.067
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F++ + Y +V D V+ +HES+ L+ S C + + S F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 266 KKDVFSEKI 274
>sp|P04695|GNAT1_BOVIN Guanine nucleotide-binding protein G(t), alpha-1 subunit
(Transducin alpha-1 chain)
Length = 350
Score = 36.2 bits (82), Expect = 0.067
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F++ + Y +V D V+ +HES+ L+ S C + + S F N
Sbjct: 206 KWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLN 265
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 266 KKDVFSEKI 274
>sp|P50149|GNAT2_MOUSE Guanine nucleotide-binding protein G(t), alpha-2 subunit
(Transducin alpha-2 chain)
Length = 354
Score = 32.7 bits (73), Expect = 0.74
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F + + Y +V D V+ +HES+ L+ S C + S F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDDEVNRMHESLHLFNSICNHKFFAATSIVLFLN 269
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 270 KKDLFEEKI 278
>sp|P19087|GNAT2_HUMAN Guanine nucleotide-binding protein G(t), alpha-2 subunit
(Transducin alpha-2 chain)
Length = 354
Score = 32.7 bits (73), Expect = 0.74
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F + + Y +V D V+ +HES+ L+ S C + S F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDDEVNRMHESLHLFNSICNHKFFAATSIVLFLN 269
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 270 KKDLFEEKI 278
>sp|P04696|GNAT2_BOVIN Guanine nucleotide-binding protein G(t), alpha-2 subunit
(Transducin alpha-2 chain)
Length = 354
Score = 32.7 bits (73), Expect = 0.74
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F + + Y +V D V+ +HES+ L+ S C + S F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDDEVNRMHESLHLFNSICNHKFFAATSIVLFLN 269
Query: 400 YKNIYLAQI 374
K+++ +I
Sbjct: 270 KKDLFEEKI 278
>sp|P29348|GNAT3_RAT Guanine nucleotide-binding protein G(t), alpha-3 subunit (Gustducin
alpha-3 chain)
Length = 354
Score = 32.7 bits (73), Expect = 0.74
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -1
Query: 574 KYVNIFCTLSCSVFLSHI--YRIVSSAYDVVSMVHESVELYISFCIYNHKIDGSFYFFEN 401
K+++ F ++C +F + + Y +V + V+ +HES+ L+ S C + + S F N
Sbjct: 210 KWIHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFATTSIVLFLN 269
Query: 400 YKNIYLAQI 374
K+++ ++
Sbjct: 270 KKDLFQEKV 278
>sp|Q8N787|CR030_HUMAN Hypothetical protein C18orf30
Length = 583
Score = 32.3 bits (72), Expect = 0.97
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 549 CPVVFSYHISIGLSPVPTTSYPW 481
C + F Y I IG+ P P YPW
Sbjct: 463 CIITFQYFICIGIPPAPCRDYPW 485
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,555,303
Number of Sequences: 369166
Number of extensions: 1298815
Number of successful extensions: 3716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3716
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)