Planaria EST Database


DrC_02554

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02554
         (394 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O01393|UNC9_CAEEL  Innexin unc-9 (Uncoordinated protein 9)      57   1e-08
sp|Q23027|INX5_CAEEL  Innexin-5                                    52   6e-07
sp|Q23157|INX11_CAEEL  Innexin-11                                  49   5e-06
sp|Q27295|EAT5_CAEEL  Innexin eat-5                                45   4e-05
sp|Q23593|INX8_CAEEL  Innexin-8                                    44   9e-05
sp|Q22549|INX10_CAEEL  Innexin-10                                  42   6e-04
sp|Q19746|INX3_CAEEL  Innexin-3                                    40   0.001
sp|Q03412|UNC7_CAEEL  Innexin unc-7 (Uncoordinated protein 7)      36   0.024
sp|P33085|SHAKB_DROME  Innexin shaking-B (Passover protein)        34   0.12 
sp|O61788|INX17_CAEEL  Innexin-17 (Gap junction innexin)           31   0.78 
>sp|O01393|UNC9_CAEEL Innexin unc-9 (Uncoordinated protein 9)
          Length = 386

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 34/106 (32%), Positives = 60/106 (56%)
 Frame = +1

Query: 73  IASMMEHWLVQHREYRTGFSHRLKLRMYKFMKCFVISKRFATWLSFGYLTMKCLYLINSI 252
           IA+ +E  L  H +++    +RLKL     +   + ++     ++F Y+++K LY +N +
Sbjct: 159 IATNVEEAL--HVKHQVMSGNRLKL-----LNLIICTRSSGAAVTFLYISVKILYTVNIV 211

Query: 253 GQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWEVTSVFPRVT 390
           GQIFL+  F  L N  ++   +GL++  ++  GR WE +  FPRVT
Sbjct: 212 GQIFLLNTF--LGNRSKW---YGLQVLNDLMNGREWEESGHFPRVT 252
>sp|Q23027|INX5_CAEEL Innexin-5
          Length = 447

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
 Frame = +1

Query: 22  LNVKHLVKISEKAEPAKIASMMEHWLVQHREYRTGFSHRLKLR----MYKFMKCFVISKR 189
           L +K L  +SE +   KI S M    V+  ++   F  +L  R    ++K     V S +
Sbjct: 137 LKIKELAAVSEASR--KIKSNMSDDQVKATKFGRYFFKKLNFRNESPVFKETGSVVASGK 194

Query: 190 FATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWEVT 369
           F   L   YL +K LYL N + Q +++  FL+       S  +G +  +++  GR WE T
Sbjct: 195 FLPAL---YLLVKILYLANIVLQFWILTYFLETK-----SWMWGWQTFQDLMAGREWETT 246

Query: 370 SVFPRVT 390
            +FPRVT
Sbjct: 247 GIFPRVT 253
>sp|Q23157|INX11_CAEEL Innexin-11
          Length = 465

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
 Frame = +1

Query: 136 RLKLRMYKFMKC--FVISKRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYS 309
           R K++++K +    F  S  F +W+   YL  K LY +N   Q++LM  FL  N H  Y 
Sbjct: 177 RKKVQVHKTVTFLNFQYSSGFISWI---YLFTKVLYFLNVFAQLYLMNYFLGTNRHHWY- 232

Query: 310 SNFGLEIARNIFKGRNWEVTSVFPR 384
              G  + ++I +G  WE +  FPR
Sbjct: 233 ---GFGVVQDIVQGEPWERSGYFPR 254
>sp|Q27295|EAT5_CAEEL Innexin eat-5
          Length = 423

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
 Frame = +1

Query: 16  TGLNVKHLVKISEKAEPAKIASMMEHWLVQHREYRTGFSHRLK----LRMYKFMKCFVIS 183
           +G+N+  LV+ ++KAE A+     +   +  R        R       +M K  + F   
Sbjct: 126 SGINIIKLVETAQKAEGAESEERKKQIDIICRHISNNLRKRRNEEETTKMAKIQRIF--G 183

Query: 184 KRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWE 363
            +   +++  YL  K +Y+ NS  Q +    FL  N  D Y   +G+ I  +I KG +WE
Sbjct: 184 MQHGKYITNVYLVTKLIYMTNSFLQFYSTNKFLGQN--DPY---WGMRILDDILKGTDWE 238

Query: 364 VTSVFPRV 387
            +  FPR+
Sbjct: 239 HSGNFPRI 246
>sp|Q23593|INX8_CAEEL Innexin-8
          Length = 382

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = +1

Query: 151 MYKFMKCFVISKRFATWLSF-----GYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSN 315
           M +FM+  + S    +  SF      Y  +K LYL+N+I Q  ++  FL      + +  
Sbjct: 159 MARFMRTKITSVHTPSLFSFIRMYMVYSVIKILYLVNAIAQFVIIAIFLG----QKRNLF 214

Query: 316 FGLEIARNIFKGRNWEVTSVFPRVTY 393
           +G  +  N+  G  WE T +FPRVT+
Sbjct: 215 WGWTLFMNLLNGITWETTGLFPRVTF 240
>sp|Q22549|INX10_CAEEL Innexin-10
          Length = 559

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
 Frame = +1

Query: 16  TGLNVKHLVKISEKAEPAK--IASMMEHWLVQHREYRTGFSHRLK---LRMYKFMKCFVI 180
           +G+ +  +VK+S      K  I       L  H +    F  RL+   +R ++F+  F +
Sbjct: 129 SGIKINEIVKLSSDPNNIKPDIKRANIKSLTVHLQGALRFHRRLQKKQIRPHRFLWLFNL 188

Query: 181 SKRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNW 360
               A +++  YL  K  YL N   Q+  M  FL+ + +  Y    G+    ++  G  W
Sbjct: 189 PYS-AFFVTAMYLCTKFFYLANVCLQLMFMNRFLETDKYKWY----GMGALVDLLNGTTW 243

Query: 361 EVTSVFPRVT 390
           E + +FPRV+
Sbjct: 244 EQSGMFPRVS 253
>sp|Q19746|INX3_CAEEL Innexin-3
          Length = 420

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +1

Query: 169 CFVISKRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFK 348
           C+   K   +  S  Y+ +K +YL N   Q  ++  FL        +  +G     +++ 
Sbjct: 180 CYRFGKGLGSMTSMLYICIKLMYLANVFVQFIILNKFL-----GNETFLWGFHTFADLYA 234

Query: 349 GRNWEVTSVFPRVT 390
           GR W+ + VFPRVT
Sbjct: 235 GREWQDSGVFPRVT 248
>sp|Q03412|UNC7_CAEEL Innexin unc-7 (Uncoordinated protein 7)
          Length = 522

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 214 YLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWEVTSVFPRVT 390
           Y+ +K LY  N + Q FL+   L  N+       +G  + +++     WE T +FPRVT
Sbjct: 322 YIGIKVLYSANVLLQFFLLNHLLGSND-----LAYGFSLLKDLMHAIEWEQTGMFPRVT 375
>sp|P33085|SHAKB_DROME Innexin shaking-B (Passover protein)
          Length = 372

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 187 RFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEI---ARNIFKGRN 357
           R+  W ++ Y   + L LIN IGQ+FLM  F      D     FGL++        + R 
Sbjct: 172 RYHNWWAYRYYVCELLALINVIGQMFLMNRFF-----DGEFITFGLKVIDYMETDQEDRM 226

Query: 358 WEVTSVFPRVT 390
             +  +FPR+T
Sbjct: 227 DPMIYIFPRMT 237
>sp|O61788|INX17_CAEEL Innexin-17 (Gap junction innexin)
          Length = 362

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 316 FGLEIARNIFKGRNWEVTSVFPRVTY 393
           +G  I ++I +GR W+ +  FPRVT+
Sbjct: 212 YGWTITKDILQGRQWQESGSFPRVTF 237
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,542,202
Number of Sequences: 369166
Number of extensions: 659935
Number of successful extensions: 1546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)