Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_A19
(394 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01393|UNC9_CAEEL Innexin unc-9 (Uncoordinated protein 9) 57 1e-08
sp|Q23027|INX5_CAEEL Innexin-5 52 6e-07
sp|Q23157|INX11_CAEEL Innexin-11 49 5e-06
sp|Q27295|EAT5_CAEEL Innexin eat-5 45 4e-05
sp|Q23593|INX8_CAEEL Innexin-8 44 9e-05
sp|Q22549|INX10_CAEEL Innexin-10 42 6e-04
sp|Q19746|INX3_CAEEL Innexin-3 40 0.001
sp|Q03412|UNC7_CAEEL Innexin unc-7 (Uncoordinated protein 7) 36 0.024
sp|P33085|SHAKB_DROME Innexin shaking-B (Passover protein) 34 0.12
sp|O61788|INX17_CAEEL Innexin-17 (Gap junction innexin) 31 0.78
>sp|O01393|UNC9_CAEEL Innexin unc-9 (Uncoordinated protein 9)
Length = 386
Score = 57.0 bits (136), Expect = 1e-08
Identities = 34/106 (32%), Positives = 60/106 (56%)
Frame = +1
Query: 73 IASMMEHWLVQHREYRTGFSHRLKLRMYKFMKCFVISKRFATWLSFGYLTMKCLYLINSI 252
IA+ +E L H +++ +RLKL + + ++ ++F Y+++K LY +N +
Sbjct: 159 IATNVEEAL--HVKHQVMSGNRLKL-----LNLIICTRSSGAAVTFLYISVKILYTVNIV 211
Query: 253 GQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWEVTSVFPRVT 390
GQIFL+ F L N ++ +GL++ ++ GR WE + FPRVT
Sbjct: 212 GQIFLLNTF--LGNRSKW---YGLQVLNDLMNGREWEESGHFPRVT 252
>sp|Q23027|INX5_CAEEL Innexin-5
Length = 447
Score = 51.6 bits (122), Expect = 6e-07
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = +1
Query: 22 LNVKHLVKISEKAEPAKIASMMEHWLVQHREYRTGFSHRLKLR----MYKFMKCFVISKR 189
L +K L +SE + KI S M V+ ++ F +L R ++K V S +
Sbjct: 137 LKIKELAAVSEASR--KIKSNMSDDQVKATKFGRYFFKKLNFRNESPVFKETGSVVASGK 194
Query: 190 FATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWEVT 369
F L YL +K LYL N + Q +++ FL+ S +G + +++ GR WE T
Sbjct: 195 FLPAL---YLLVKILYLANIVLQFWILTYFLETK-----SWMWGWQTFQDLMAGREWETT 246
Query: 370 SVFPRVT 390
+FPRVT
Sbjct: 247 GIFPRVT 253
>sp|Q23157|INX11_CAEEL Innexin-11
Length = 465
Score = 48.5 bits (114), Expect = 5e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 136 RLKLRMYKFMKC--FVISKRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYS 309
R K++++K + F S F +W+ YL K LY +N Q++LM FL N H Y
Sbjct: 177 RKKVQVHKTVTFLNFQYSSGFISWI---YLFTKVLYFLNVFAQLYLMNYFLGTNRHHWY- 232
Query: 310 SNFGLEIARNIFKGRNWEVTSVFPR 384
G + ++I +G WE + FPR
Sbjct: 233 ---GFGVVQDIVQGEPWERSGYFPR 254
>sp|Q27295|EAT5_CAEEL Innexin eat-5
Length = 423
Score = 45.4 bits (106), Expect = 4e-05
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Frame = +1
Query: 16 TGLNVKHLVKISEKAEPAKIASMMEHWLVQHREYRTGFSHRLK----LRMYKFMKCFVIS 183
+G+N+ LV+ ++KAE A+ + + R R +M K + F
Sbjct: 126 SGINIIKLVETAQKAEGAESEERKKQIDIICRHISNNLRKRRNEEETTKMAKIQRIF--G 183
Query: 184 KRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWE 363
+ +++ YL K +Y+ NS Q + FL N D Y +G+ I +I KG +WE
Sbjct: 184 MQHGKYITNVYLVTKLIYMTNSFLQFYSTNKFLGQN--DPY---WGMRILDDILKGTDWE 238
Query: 364 VTSVFPRV 387
+ FPR+
Sbjct: 239 HSGNFPRI 246
>sp|Q23593|INX8_CAEEL Innexin-8
Length = 382
Score = 44.3 bits (103), Expect = 9e-05
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +1
Query: 151 MYKFMKCFVISKRFATWLSF-----GYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSN 315
M +FM+ + S + SF Y +K LYL+N+I Q ++ FL + +
Sbjct: 159 MARFMRTKITSVHTPSLFSFIRMYMVYSVIKILYLVNAIAQFVIIAIFLG----QKRNLF 214
Query: 316 FGLEIARNIFKGRNWEVTSVFPRVTY 393
+G + N+ G WE T +FPRVT+
Sbjct: 215 WGWTLFMNLLNGITWETTGLFPRVTF 240
>sp|Q22549|INX10_CAEEL Innexin-10
Length = 559
Score = 41.6 bits (96), Expect = 6e-04
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Frame = +1
Query: 16 TGLNVKHLVKISEKAEPAK--IASMMEHWLVQHREYRTGFSHRLK---LRMYKFMKCFVI 180
+G+ + +VK+S K I L H + F RL+ +R ++F+ F +
Sbjct: 129 SGIKINEIVKLSSDPNNIKPDIKRANIKSLTVHLQGALRFHRRLQKKQIRPHRFLWLFNL 188
Query: 181 SKRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNW 360
A +++ YL K YL N Q+ M FL+ + + Y G+ ++ G W
Sbjct: 189 PYS-AFFVTAMYLCTKFFYLANVCLQLMFMNRFLETDKYKWY----GMGALVDLLNGTTW 243
Query: 361 EVTSVFPRVT 390
E + +FPRV+
Sbjct: 244 EQSGMFPRVS 253
>sp|Q19746|INX3_CAEEL Innexin-3
Length = 420
Score = 40.4 bits (93), Expect = 0.001
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 169 CFVISKRFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFK 348
C+ K + S Y+ +K +YL N Q ++ FL + +G +++
Sbjct: 180 CYRFGKGLGSMTSMLYICIKLMYLANVFVQFIILNKFL-----GNETFLWGFHTFADLYA 234
Query: 349 GRNWEVTSVFPRVT 390
GR W+ + VFPRVT
Sbjct: 235 GREWQDSGVFPRVT 248
>sp|Q03412|UNC7_CAEEL Innexin unc-7 (Uncoordinated protein 7)
Length = 522
Score = 36.2 bits (82), Expect = 0.024
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 214 YLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEIARNIFKGRNWEVTSVFPRVT 390
Y+ +K LY N + Q FL+ L N+ +G + +++ WE T +FPRVT
Sbjct: 322 YIGIKVLYSANVLLQFFLLNHLLGSND-----LAYGFSLLKDLMHAIEWEQTGMFPRVT 375
>sp|P33085|SHAKB_DROME Innexin shaking-B (Passover protein)
Length = 372
Score = 33.9 bits (76), Expect = 0.12
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 187 RFATWLSFGYLTMKCLYLINSIGQIFLMQAFLQLNNHDEYSSNFGLEI---ARNIFKGRN 357
R+ W ++ Y + L LIN IGQ+FLM F D FGL++ + R
Sbjct: 172 RYHNWWAYRYYVCELLALINVIGQMFLMNRFF-----DGEFITFGLKVIDYMETDQEDRM 226
Query: 358 WEVTSVFPRVT 390
+ +FPR+T
Sbjct: 227 DPMIYIFPRMT 237
>sp|O61788|INX17_CAEEL Innexin-17 (Gap junction innexin)
Length = 362
Score = 31.2 bits (69), Expect = 0.78
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 316 FGLEIARNIFKGRNWEVTSVFPRVTY 393
+G I ++I +GR W+ + FPRVT+
Sbjct: 212 YGWTITKDILQGRQWQESGSFPRVTF 237
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,542,202
Number of Sequences: 369166
Number of extensions: 659935
Number of successful extensions: 1546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)