Planaria EST Database


DrC_02550

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02550
         (767 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52826|CACP_COLLI  Carnitine O-acetyltransferase precurso...    33   0.85 
sp|O74552|VPS35_SCHPO  Vacuolar protein sorting-associated p...    33   0.85 
sp|Q9Z6W0|SYG_CHLPN  Glycyl-tRNA synthetase (GlyRS) [Include...    32   1.5  
sp|P48616|VIME_BOVIN  Vimentin                                     31   4.2  
sp|Q6MT07|DNAJ_MYCMS  Chaperone protein dnaJ                       31   4.2  
sp|Q27171|DYHC_PARTE  Dynein heavy chain, cytosolic (DYHC) (...    31   4.2  
sp|Q92359|YDHE_SCHPO  Hypothetical protein C6G9.14 in chromo...    30   5.5  
sp|Q9CFZ0|SBCC_LACLA  Nuclease sbcCD subunit C                     30   5.5  
sp|O12946|P53_PLAFE  Cellular tumor antigen p53 (Tumor suppr...    30   7.2  
sp|Q92SW4|IF2_RHIME  Translation initiation factor IF-2            30   9.4  
>sp|P52826|CACP_COLLI Carnitine O-acetyltransferase precursor (Carnitine acetylase) (CAT)
           (Carnitine acetyltransferase) (CrAT)
          Length = 627

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 4/151 (2%)
 Frame = +2

Query: 239 LDLIIKCYNTCQQAFKKNYPKLNFAIEQCIEPNRRYVVLSETSIYFKVCASPARDCKSMS 418
           LD+I+  ++     F KNYPK      + I P+  ++ L+    Y+++        +S S
Sbjct: 408 LDVIVLVFHQ----FGKNYPK-----SEKISPDA-FIQLALQLAYYRMYGHSCATYESAS 457

Query: 419 LRKRPIKQEMVERPQSINSNEFVEIKGKRFFPILVDEDMLDIVKSVNKYANKDDPEIKAR 598
           LR   + +    R  SI S++FV+       P   D++  D+++   + A+K+   +  +
Sbjct: 458 LRMFRLGRTDTIRSTSIESHKFVQSMDS---PDKSDQEKADLLRRATQ-AHKEYTNMAIQ 513

Query: 599 IEILQHNF----IQSIQNLVSDpreNIENQY 679
              +  +     +Q+I++LVS P   ++  Y
Sbjct: 514 GNAIDRHLLGLKLQAIEDLVSIPELFMDTAY 544
>sp|O74552|VPS35_SCHPO Vacuolar protein sorting-associated protein vps35
          Length = 785

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 29/205 (14%)
 Frame = +2

Query: 116 EYASKSILEIHDTDAIYEAIELPRNEEQISVLVKYTRPDVILDLIIKCYNTCQQAFKK-- 289
           EYA + +L  H  + I     LP  +  +S+L        IL+  ++CY    Q   +  
Sbjct: 306 EYAIQEVLWSHVVEVIQSRSGLPL-DCIVSILSS------ILNFFLRCYPYKPQYADRVF 358

Query: 290 --------NYPKLNFAI-EQCIEPNRRYVVLSETSIY--FKVCAS-----PARDCKSMSL 421
                   N P L  A+ E+ ++ +   ++L   + +  F  C       P  + +  +L
Sbjct: 359 QYINEHIINQPSLRSALHERPLQKSLCAILLLPLTYFPSFSYCLELQNFLPVFNAQDPNL 418

Query: 422 R---KRPIKQEMVERPQSINS-NEFVEIKGKRFFPILVDE---DMLDIVKSVN---KYAN 571
           R    R I Q+++E+  S++   E  E+ G  F  +++++   D LD +++V     Y N
Sbjct: 419 RYDIARMIVQKIIEKGHSLSELTEAQELLG--FVSVIIEKKGVDSLDDLQNVALMVHYLN 476

Query: 572 KDDPEIKARI-EILQHNFIQSIQNL 643
            DDP+I+  I   L+  FI++ +N+
Sbjct: 477 NDDPQIQIEILRSLKDTFIKAGENV 501
>sp|Q9Z6W0|SYG_CHLPN Glycyl-tRNA synthetase (GlyRS) [Includes: Glycyl-tRNA synthetase
           alpha chain (Glycine--tRNA ligase alpha chain);
           Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase
           beta chain)]
          Length = 1010

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = +2

Query: 104 IDQLEYASKSILEIHDTDAIYEAIELPRNEEQISVLVKYTRPDVILDLIIKCYNTCQQAF 283
           I QLE  ++ +L  H+   +YE +E+  +  ++++LVK   P+V+           Q+AF
Sbjct: 335 IQQLESLARQVLTDHNI--VYEGLEVLGSPRRLALLVKNVAPEVV-----------QKAF 381

Query: 284 KKNYPKL 304
           +K  P L
Sbjct: 382 EKKGPML 388
>sp|P48616|VIME_BOVIN Vimentin
          Length = 466

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +2

Query: 437 KQEMVERPQSINSNEFVEIKG--KRFFPILVDEDMLDIVKSVNKYANKDDPEIKARIEIL 610
           K   +E+   I   E  ++KG  K     L +E+M ++ + V++  N      KAR E+ 
Sbjct: 120 KVRFLEQQNKILLAELEQLKGQGKSRLGQLYEEEMRELRRQVDQLTND-----KARAEVE 174

Query: 611 QHNFIQSIQNLVSDpreNIENQYIQ 685
           +HN  + I  L    RE ++ + +Q
Sbjct: 175 RHNLAEDIMRL----REKLQEEMLQ 195
>sp|Q6MT07|DNAJ_MYCMS Chaperone protein dnaJ
          Length = 372

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 458 PQSINSNEFVEIKGKRFFPILVDEDMLDIVKSVN----KYANKDDPEIKARI 601
           P+SINSNEF+ I  K  +  +  +   D++  VN    K  NK + E+  +I
Sbjct: 307 PKSINSNEFIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLNKKEKELIEQI 358
>sp|Q27171|DYHC_PARTE Dynein heavy chain, cytosolic (DYHC) (DHC08)
          Length = 4540

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
 Frame = +2

Query: 434  IKQEMVER---PQSINSNE--FVEIKGKRFFPILVDEDMLDIVKSVNKYANKDDPE---I 589
            I Q +VE+    QS N N   F  ++GK    +      LD ++ + +    + PE   +
Sbjct: 4165 ILQSLVEQFFTEQSFNHNHPLFFTLEGKEAITVPEGRTYLDFMQWIEQLPKTESPEWSGL 4224

Query: 590  KARIEILQHN-----FIQSIQNLVSDpreNIENQYIQTPK 694
             + +E +Q +      I  +QNL  +  E I    +QT K
Sbjct: 4225 PSNVERVQRDQLTQKLITKVQNLQQEGEEEITQIEVQTEK 4264
>sp|Q92359|YDHE_SCHPO Hypothetical protein C6G9.14 in chromosome I
          Length = 681

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
 Frame = +2

Query: 143 IHDTDAIYEAIELPRNEEQISVLVKYTRPDVIL--------DLIIKCYNTCQQ 277
           +H T A+ + I+L  + +QIS +V   RP+V+L         +I KC N   Q
Sbjct: 427 MHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGNHVIQKCLNKFSQ 479
>sp|Q9CFZ0|SBCC_LACLA Nuclease sbcCD subunit C
          Length = 1046

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
 Frame = +2

Query: 284 KKNYPKLNFAIEQCIEPNRRYVVLSETSIYFKVCASPARDCKSMSLRKRPIKQEMVERPQ 463
           + +Y +L   +++  E  ++  VL E +   +   +  +   S+ L+K  I+ +  E+  
Sbjct: 540 ESSYKELGNLLKEIDESQKKQTVLLEKNKQLQQLKTELKT--SLDLKK--IEADEFEKEL 595

Query: 464 SINSNEFV----EIKGKRFFPILVDEDMLDIVKSVNKYANKDDPEIKARIEILQHNFIQS 631
           SI  +EF+    +I    F  + +DE +L++ KS+     K+D E K ++  L+   ++ 
Sbjct: 596 SILYSEFIADYSQIFPDSFDEVSIDESLLNLTKSLELEEVKND-ETKVKLADLESKKLE- 653

Query: 632 IQNLVSD 652
           +Q  V D
Sbjct: 654 LQEKVKD 660
>sp|O12946|P53_PLAFE Cellular tumor antigen p53 (Tumor suppressor p53)
          Length = 366

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 22/187 (11%)
 Frame = +2

Query: 68  CPNHHQTKTKATIDQLEYASKSILEIHDTDAIYEAIELPRNEEQISVLVKYTRPDV---- 235
           CP HHQT+     D  E+ S  I       A+Y   E P  + Q SV V Y  P +    
Sbjct: 154 CP-HHQTE-----DTAEHRSHLIRLEGSQRALY--FEDPHTKRQ-SVTVPYEPPQLGSET 204

Query: 236 -ILDLIIKCYNTCQQAFKKNYPKLNFAIEQCIEPNRRYVVLSETSIYFKVCASPARDCKS 412
             + L   C ++C     +        +E    P+   +VL       +VCA P RD K+
Sbjct: 205 TAILLSFMCNSSCMGGMNRRQILTILTLET---PDG--LVLGRRCFEVRVCACPGRDRKT 259

Query: 413 --MSLRKRPIKQEMVERPQSINSN--------------EFVEIKGKRFFPILV-DEDMLD 541
              S  K P   +  ++ +   SN                 E + K  F +LV   +  +
Sbjct: 260 DEESSTKTPNGPKQTKKRKQAPSNSAPHTTTVMKSKSSSSAEEEDKEVFTVLVKGRERYE 319

Query: 542 IVKSVNK 562
           I+K +N+
Sbjct: 320 IIKKINE 326
>sp|Q92SW4|IF2_RHIME Translation initiation factor IF-2
          Length = 889

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
 Frame = +2

Query: 326 IEPNRRYVVLSETSIYFKVCASPARDCKSMSLRKRPIKQEMVERPQSINSNEFVEIKGKR 505
           +E N + +   +T  +    A  AR  ++  +    +  +    PQ+I S    +  G  
Sbjct: 431 VEQNGQKITFIDTPGHAAFTAMRARGAQATDIAVLVVAADDSVMPQTIESINHAKAAG-- 488

Query: 506 FFPILVDEDMLDIVKSVNKYANKDDPEIKARIEILQHN-FIQSIQNLVSDpreNIENQ 676
                     + I+ ++NK         K R E+LQH  F++S+   V D   + +NQ
Sbjct: 489 ----------VPIIVAINKIDKPSANPQKVRTELLQHEVFVESMGGEVLDVEVSAKNQ 536
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,806,685
Number of Sequences: 369166
Number of extensions: 1615058
Number of successful extensions: 4228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4228
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)