Planaria EST Database


DrC_02549

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02549
         (558 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43402|CX4NB_HUMAN  Neighbor of COX4                           107   2e-23
sp|O70378|CX4NB_MOUSE  Neighbor of COX4                           106   4e-23
sp|Q9Y3B6|CN122_HUMAN  UPF0172 protein C14orf122                   98   1e-20
sp|Q9DB76|CN122_MOUSE  UPF0172 protein C14orf122 homolog           96   6e-20
sp|Q9W1Y1|U172_DROME  Hypothetical UPF0172 protein CG3501          94   2e-19
sp|Q9FG71|U172_ARATH  Hypothetical UPF0172 protein At5g55940       67   2e-11
sp|Q60279|YZ19_METJA  Hypothetical protein MJECL19                 32   1.1  
sp|Q4R5M3|SKB1_MACFA  Protein arginine N-methyltransferase 5...    32   1.4  
sp|P32333|MOT1_YEAST  TATA-binding protein associated factor...    30   3.1  
sp|Q8XP97|GLGC_CLOPE  Glucose-1-phosphate adenylyltransferas...    30   3.1  
>sp|O43402|CX4NB_HUMAN Neighbor of COX4
          Length = 210

 Score =  107 bits (267), Expect = 2e-23
 Identities = 60/151 (39%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
 Frame = +1

Query: 19  IICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIA 198
           +  + IPLFH ++ L PMLEVAL  I+ +CK     I+GYYQ NE +   SP  VA K+A
Sbjct: 53  LFVDCIPLFHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVA 112

Query: 199 DKIYENNENSCLLMVKNEELDKNPINP-FCVYRYQDNRWKIIEGSNPPKVD-DNASEKTE 372
            +I E   ++ L+MV N +   + + P   VY + +NRW+  +  +    D   A   + 
Sbjct: 113 SRIAEGFSDTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISA 172

Query: 373 HLLKVRAQRALVDFDNHLDDISLNWPNDLIS 465
            LL  R+   LVDFDNHLDDI  +W N  I+
Sbjct: 173 SLLDSRSYETLVDFDNHLDDIRNDWTNPEIN 203
>sp|O70378|CX4NB_MOUSE Neighbor of COX4
          Length = 207

 Score =  106 bits (264), Expect = 4e-23
 Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
 Frame = +1

Query: 19  IICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIA 198
           +  + IPLFH ++ LTPMLEVAL  I+ +CK     I+GYYQ NE +   SP  VA K+A
Sbjct: 50  LFVDCIPLFHGTLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVA 109

Query: 199 DKIYENNENSCLLMVKNEELDKNPINP-FCVYRYQDNRWKIIEGSNPPKVD-DNASEKTE 372
            +I E   ++ L+MV N +   +   P   VY   +NRW+  +  +    D   A   + 
Sbjct: 110 SRIAEGFGDAALIMVDNAKFTMDCAAPTIHVYEQHENRWRCRDPHHDYCEDWPEAQRISA 169

Query: 373 HLLKVRAQRALVDFDNHLDDISLNWPNDLIS 465
            LL  R+   LVDFDNHLDDI  +W N  I+
Sbjct: 170 SLLDSRSYETLVDFDNHLDDIRSDWTNPEIN 200
>sp|Q9Y3B6|CN122_HUMAN UPF0172 protein C14orf122
          Length = 208

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
 Frame = +1

Query: 4   SKENLIICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPV 183
           S E L + + +PLFH  + L+ MLEVALNQ++++  +  L ++GYY  N  ++  SP P+
Sbjct: 37  SGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPL 96

Query: 184 AYKIADKIYENNENSCLLMVKNEELDKNP-INPFCVYRYQDNRWKIIEGSNPPKVD-DNA 357
           A KIA +I E   ++ L+M+ N++L   P + P  V   Q  RW   + +     D + +
Sbjct: 97  ALKIAGRIAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEES 156

Query: 358 SEKTEHLLKVRAQRALVDFDNHLDDISLNWPNDLISSLLEKNIG 489
            +    LL+ RA + LVDFD HLDDI  +W N  +++ + + +G
Sbjct: 157 RQMVGALLEDRAHQHLVDFDCHLDDIRQDWTNQRLNTQITQWVG 200
>sp|Q9DB76|CN122_MOUSE UPF0172 protein C14orf122 homolog
          Length = 206

 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
 Frame = +1

Query: 4   SKENLIICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPV 183
           S E L + + +PLFH  + L+ MLEVALNQ++++  +  L ++GYY  N  +D  SP P+
Sbjct: 37  SGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPL 96

Query: 184 AYKIADKIYENNENSCLLMVKNEELDKNP-INPFCVYRYQDNRWKIIEGSNPPKVD-DNA 357
           A KIA +I E    + L+M+ N++L   P + P  V   Q  +W   + +     D + +
Sbjct: 97  ALKIAGRIAEFFPRAVLIMLDNKKLVTRPRVPPVIVLENQGLQWVPKDKNLVMWRDWEES 156

Query: 358 SEKTEHLLKVRAQRALVDFDNHLDDISLNWPNDLISS 468
            +    LL+ RA + LVDFD HLDDI  +W N  +++
Sbjct: 157 RQMVGALLEGRAHQHLVDFDCHLDDIRQDWTNQRLNT 193
>sp|Q9W1Y1|U172_DROME Hypothetical UPF0172 protein CG3501
          Length = 203

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 64/157 (40%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
 Frame = +1

Query: 22  ICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQI--NEYIDRNSPTPVAYKI 195
           I +AIPLFH  + +TPM EVAL  I+   ++E L I+GYY    N Y ++   TP A KI
Sbjct: 43  IVDAIPLFHQCLYVTPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAA-KI 101

Query: 196 ADKIYENNENSCLLMVKNE----ELDKNPINPFCVYRYQDNRWKIIEGSNPPKVDDNASE 363
           ADKI EN +N+C ++V N+    + D+  I  F        RW   + +     D    E
Sbjct: 102 ADKIQENFKNACFVVVDNKLMTLQHDRAAIQVFNCPGDSGARWSKAKFTLSQASD--TLE 159

Query: 364 KTEHLLKVRAQRALVDFDNHLDDISLNWPNDLISSLL 474
               LLK  A R LVDFDNHLD+   NW ND ++  L
Sbjct: 160 GVSLLLKRGAMRDLVDFDNHLDNPDKNWTNDFLNQPL 196
>sp|Q9FG71|U172_ARATH Hypothetical UPF0172 protein At5g55940
          Length = 208

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
 Frame = +1

Query: 22  ICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIAD 201
           I +++PLFH ++ L P LE++L  IE     + L I GY+  NE  D      VA  I D
Sbjct: 51  ISDSVPLFHSNLALLPPLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGD 110

Query: 202 KIYENNENSCLLMVKNEEL-------DKNPINPFCVYRYQDNRWKIIEGSNPPKV---DD 351
            I      + +L++ N++L       +++P+   CV     N W+++      K+   + 
Sbjct: 111 HISRYFPQAPILLLNNKKLEALSKGKERSPVMQLCVKDASKN-WRVVGADGGSKLLLKEP 169

Query: 352 NASEKTEHLLKVRAQRALVDFDNHLDDISLNWPN 453
           +A+      +     + + D D+HLDD++ +W N
Sbjct: 170 SANVVLSDYISSEKWKDVTDVDDHLDDVTKDWLN 203
>sp|Q60279|YZ19_METJA Hypothetical protein MJECL19
          Length = 174

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
 Frame = +1

Query: 79  VALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIADKIYENNENSCLLMV----- 243
           V L   EL CK   LC   +  +++  D    +   YK+AD +Y N E+  L+ +     
Sbjct: 47  VLLKVAELICKN-GLCNEAFLILDKIPDSYYKSSALYKMADILYRNKEHDRLIQIAEKIP 105

Query: 244 ---KNEELDKNPINPFCVYRYQDNRWKIIEGSNPPKVDDNASEKTEHLLKV 387
              K  E+    +   C     D    I E     K+ DN   K+E L K+
Sbjct: 106 DDYKKSEVLLKVVELLCESGKYDEAINIAE-----KIPDN-YYKSEALFKI 150
>sp|Q4R5M3|SKB1_MACFA Protein arginine N-methyltransferase 5 (Shk1 kinase-binding protein
           1 homolog) (SKB1 homolog)
          Length = 637

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +1

Query: 136 YYQINEYIDRNSPTPVAYKIADKIYENNENSCLLMVKN-------EELDKNPINPFCVYR 294
           Y Q  EY+ +N P P AY++  K YE+   S L  + +       E  +K+PI      +
Sbjct: 280 YLQYLEYLSQNRPPPNAYELFAKGYEDYLQSPLQPLMDNLESQTYEVFEKDPIK---YSQ 336

Query: 295 YQDNRWKIIEGSNPPKVDD 351
           YQ   +K + G  P +  D
Sbjct: 337 YQQAIYKCLLGRVPEEEKD 355
>sp|P32333|MOT1_YEAST TATA-binding protein associated factor MOT1 (TBP-associated factor
           MOT1) (Modifier of transcription 1)
          Length = 1867

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +1

Query: 295 YQDNRWKIIEGSNPPKVDDNASEKTEHLLKVRAQRA-------LVDFDNHLDDISLNWP- 450
           +  N   ++ G+N     DNA  K EH +K++ + A       L+  D+HL  +S +W  
Sbjct: 78  WDPNESDLVGGTNEGSPLDNAQVKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLS-DWKL 136

Query: 451 NDLISS 468
           N+++ S
Sbjct: 137 NEILKS 142
>sp|Q8XP97|GLGC_CLOPE Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase)
           (ADP-glucose pyrophosphorylase) (ADPGlc PPase)
          Length = 393

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
 Frame = +1

Query: 139 YQINEYIDRNSPTPVAYKIADKIYENNENSCLLMVKNEELDKNPINPFCVYRYQDNRWKI 318
           YQ  E+I+R  P  V     D IY+ + +  L M K +E D   I    V  ++ +R+ I
Sbjct: 113 YQNIEFIERYDPEYVLILSGDHIYKMDYDKMLEMHKQKEADAT-IAVINVPMHEASRFGI 171

Query: 319 IEGSNPPKVDDNASEKTEHLLKVRAQRALVDFDNHL-------DDISLNWPNDLISSLLE 477
           +  +    + +   EK EH     A   +  F+  +       D++  +  ND   +++ 
Sbjct: 172 MNTNEDLSIYE-FEEKPEHPKSTNASMGIYIFNWKILKKFLEEDELDQSSSNDFGKNIIP 230

Query: 478 KNIGLSSK*MSVAF 519
           K +    K ++  F
Sbjct: 231 KMLNSGKKLIAYPF 244
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,545,314
Number of Sequences: 369166
Number of extensions: 973543
Number of successful extensions: 2466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)