Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_P05
(558 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43402|CX4NB_HUMAN Neighbor of COX4 107 2e-23
sp|O70378|CX4NB_MOUSE Neighbor of COX4 106 4e-23
sp|Q9Y3B6|CN122_HUMAN UPF0172 protein C14orf122 98 1e-20
sp|Q9DB76|CN122_MOUSE UPF0172 protein C14orf122 homolog 96 6e-20
sp|Q9W1Y1|U172_DROME Hypothetical UPF0172 protein CG3501 94 2e-19
sp|Q9FG71|U172_ARATH Hypothetical UPF0172 protein At5g55940 67 2e-11
sp|Q60279|YZ19_METJA Hypothetical protein MJECL19 32 1.1
sp|Q4R5M3|SKB1_MACFA Protein arginine N-methyltransferase 5... 32 1.4
sp|P32333|MOT1_YEAST TATA-binding protein associated factor... 30 3.1
sp|Q8XP97|GLGC_CLOPE Glucose-1-phosphate adenylyltransferas... 30 3.1
>sp|O43402|CX4NB_HUMAN Neighbor of COX4
Length = 210
Score = 107 bits (267), Expect = 2e-23
Identities = 60/151 (39%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Frame = +1
Query: 19 IICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIA 198
+ + IPLFH ++ L PMLEVAL I+ +CK I+GYYQ NE + SP VA K+A
Sbjct: 53 LFVDCIPLFHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVA 112
Query: 199 DKIYENNENSCLLMVKNEELDKNPINP-FCVYRYQDNRWKIIEGSNPPKVD-DNASEKTE 372
+I E ++ L+MV N + + + P VY + +NRW+ + + D A +
Sbjct: 113 SRIAEGFSDTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISA 172
Query: 373 HLLKVRAQRALVDFDNHLDDISLNWPNDLIS 465
LL R+ LVDFDNHLDDI +W N I+
Sbjct: 173 SLLDSRSYETLVDFDNHLDDIRNDWTNPEIN 203
>sp|O70378|CX4NB_MOUSE Neighbor of COX4
Length = 207
Score = 106 bits (264), Expect = 4e-23
Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Frame = +1
Query: 19 IICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIA 198
+ + IPLFH ++ LTPMLEVAL I+ +CK I+GYYQ NE + SP VA K+A
Sbjct: 50 LFVDCIPLFHGTLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVA 109
Query: 199 DKIYENNENSCLLMVKNEELDKNPINP-FCVYRYQDNRWKIIEGSNPPKVD-DNASEKTE 372
+I E ++ L+MV N + + P VY +NRW+ + + D A +
Sbjct: 110 SRIAEGFGDAALIMVDNAKFTMDCAAPTIHVYEQHENRWRCRDPHHDYCEDWPEAQRISA 169
Query: 373 HLLKVRAQRALVDFDNHLDDISLNWPNDLIS 465
LL R+ LVDFDNHLDDI +W N I+
Sbjct: 170 SLLDSRSYETLVDFDNHLDDIRSDWTNPEIN 200
>sp|Q9Y3B6|CN122_HUMAN UPF0172 protein C14orf122
Length = 208
Score = 98.2 bits (243), Expect = 1e-20
Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Frame = +1
Query: 4 SKENLIICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPV 183
S E L + + +PLFH + L+ MLEVALNQ++++ + L ++GYY N ++ SP P+
Sbjct: 37 SGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPL 96
Query: 184 AYKIADKIYENNENSCLLMVKNEELDKNP-INPFCVYRYQDNRWKIIEGSNPPKVD-DNA 357
A KIA +I E ++ L+M+ N++L P + P V Q RW + + D + +
Sbjct: 97 ALKIAGRIAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEES 156
Query: 358 SEKTEHLLKVRAQRALVDFDNHLDDISLNWPNDLISSLLEKNIG 489
+ LL+ RA + LVDFD HLDDI +W N +++ + + +G
Sbjct: 157 RQMVGALLEDRAHQHLVDFDCHLDDIRQDWTNQRLNTQITQWVG 200
>sp|Q9DB76|CN122_MOUSE UPF0172 protein C14orf122 homolog
Length = 206
Score = 95.9 bits (237), Expect = 6e-20
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Frame = +1
Query: 4 SKENLIICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPV 183
S E L + + +PLFH + L+ MLEVALNQ++++ + L ++GYY N +D SP P+
Sbjct: 37 SGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPL 96
Query: 184 AYKIADKIYENNENSCLLMVKNEELDKNP-INPFCVYRYQDNRWKIIEGSNPPKVD-DNA 357
A KIA +I E + L+M+ N++L P + P V Q +W + + D + +
Sbjct: 97 ALKIAGRIAEFFPRAVLIMLDNKKLVTRPRVPPVIVLENQGLQWVPKDKNLVMWRDWEES 156
Query: 358 SEKTEHLLKVRAQRALVDFDNHLDDISLNWPNDLISS 468
+ LL+ RA + LVDFD HLDDI +W N +++
Sbjct: 157 RQMVGALLEGRAHQHLVDFDCHLDDIRQDWTNQRLNT 193
>sp|Q9W1Y1|U172_DROME Hypothetical UPF0172 protein CG3501
Length = 203
Score = 94.0 bits (232), Expect = 2e-19
Identities = 64/157 (40%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Frame = +1
Query: 22 ICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQI--NEYIDRNSPTPVAYKI 195
I +AIPLFH + +TPM EVAL I+ ++E L I+GYY N Y ++ TP A KI
Sbjct: 43 IVDAIPLFHQCLYVTPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAA-KI 101
Query: 196 ADKIYENNENSCLLMVKNE----ELDKNPINPFCVYRYQDNRWKIIEGSNPPKVDDNASE 363
ADKI EN +N+C ++V N+ + D+ I F RW + + D E
Sbjct: 102 ADKIQENFKNACFVVVDNKLMTLQHDRAAIQVFNCPGDSGARWSKAKFTLSQASD--TLE 159
Query: 364 KTEHLLKVRAQRALVDFDNHLDDISLNWPNDLISSLL 474
LLK A R LVDFDNHLD+ NW ND ++ L
Sbjct: 160 GVSLLLKRGAMRDLVDFDNHLDNPDKNWTNDFLNQPL 196
>sp|Q9FG71|U172_ARATH Hypothetical UPF0172 protein At5g55940
Length = 208
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Frame = +1
Query: 22 ICNAIPLFHHSITLTPMLEVALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIAD 201
I +++PLFH ++ L P LE++L IE + L I GY+ NE D VA I D
Sbjct: 51 ISDSVPLFHSNLALLPPLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGD 110
Query: 202 KIYENNENSCLLMVKNEEL-------DKNPINPFCVYRYQDNRWKIIEGSNPPKV---DD 351
I + +L++ N++L +++P+ CV N W+++ K+ +
Sbjct: 111 HISRYFPQAPILLLNNKKLEALSKGKERSPVMQLCVKDASKN-WRVVGADGGSKLLLKEP 169
Query: 352 NASEKTEHLLKVRAQRALVDFDNHLDDISLNWPN 453
+A+ + + + D D+HLDD++ +W N
Sbjct: 170 SANVVLSDYISSEKWKDVTDVDDHLDDVTKDWLN 203
>sp|Q60279|YZ19_METJA Hypothetical protein MJECL19
Length = 174
Score = 32.0 bits (71), Expect = 1.1
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Frame = +1
Query: 79 VALNQIELFCKKEDLCISGYYQINEYIDRNSPTPVAYKIADKIYENNENSCLLMV----- 243
V L EL CK LC + +++ D + YK+AD +Y N E+ L+ +
Sbjct: 47 VLLKVAELICKN-GLCNEAFLILDKIPDSYYKSSALYKMADILYRNKEHDRLIQIAEKIP 105
Query: 244 ---KNEELDKNPINPFCVYRYQDNRWKIIEGSNPPKVDDNASEKTEHLLKV 387
K E+ + C D I E K+ DN K+E L K+
Sbjct: 106 DDYKKSEVLLKVVELLCESGKYDEAINIAE-----KIPDN-YYKSEALFKI 150
>sp|Q4R5M3|SKB1_MACFA Protein arginine N-methyltransferase 5 (Shk1 kinase-binding protein
1 homolog) (SKB1 homolog)
Length = 637
Score = 31.6 bits (70), Expect = 1.4
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +1
Query: 136 YYQINEYIDRNSPTPVAYKIADKIYENNENSCLLMVKN-------EELDKNPINPFCVYR 294
Y Q EY+ +N P P AY++ K YE+ S L + + E +K+PI +
Sbjct: 280 YLQYLEYLSQNRPPPNAYELFAKGYEDYLQSPLQPLMDNLESQTYEVFEKDPIK---YSQ 336
Query: 295 YQDNRWKIIEGSNPPKVDD 351
YQ +K + G P + D
Sbjct: 337 YQQAIYKCLLGRVPEEEKD 355
>sp|P32333|MOT1_YEAST TATA-binding protein associated factor MOT1 (TBP-associated factor
MOT1) (Modifier of transcription 1)
Length = 1867
Score = 30.4 bits (67), Expect = 3.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Frame = +1
Query: 295 YQDNRWKIIEGSNPPKVDDNASEKTEHLLKVRAQRA-------LVDFDNHLDDISLNWP- 450
+ N ++ G+N DNA K EH +K++ + A L+ D+HL +S +W
Sbjct: 78 WDPNESDLVGGTNEGSPLDNAQVKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLS-DWKL 136
Query: 451 NDLISS 468
N+++ S
Sbjct: 137 NEILKS 142
>sp|Q8XP97|GLGC_CLOPE Glucose-1-phosphate adenylyltransferase (ADP-glucose synthase)
(ADP-glucose pyrophosphorylase) (ADPGlc PPase)
Length = 393
Score = 30.4 bits (67), Expect = 3.1
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Frame = +1
Query: 139 YQINEYIDRNSPTPVAYKIADKIYENNENSCLLMVKNEELDKNPINPFCVYRYQDNRWKI 318
YQ E+I+R P V D IY+ + + L M K +E D I V ++ +R+ I
Sbjct: 113 YQNIEFIERYDPEYVLILSGDHIYKMDYDKMLEMHKQKEADAT-IAVINVPMHEASRFGI 171
Query: 319 IEGSNPPKVDDNASEKTEHLLKVRAQRALVDFDNHL-------DDISLNWPNDLISSLLE 477
+ + + + EK EH A + F+ + D++ + ND +++
Sbjct: 172 MNTNEDLSIYE-FEEKPEHPKSTNASMGIYIFNWKILKKFLEEDELDQSSSNDFGKNIIP 230
Query: 478 KNIGLSSK*MSVAF 519
K + K ++ F
Sbjct: 231 KMLNSGKKLIAYPF 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,545,314
Number of Sequences: 369166
Number of extensions: 973543
Number of successful extensions: 2466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)