Planaria EST Database


DrC_02548

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02548
         (692 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51159|RB27A_HUMAN  Ras-related protein Rab-27A (Rab-27) ...   227   3e-59
sp|P23640|RB27A_RAT  Ras-related protein Rab-27A (Rab-27) (G...   226   4e-59
sp|O00194|RB27B_HUMAN  Ras-related protein Rab-27B (C25KG)        226   6e-59
sp|Q9ERI2|RB27A_MOUSE  Ras-related protein Rab-27A                225   8e-59
sp|Q99P58|RB27B_MOUSE  Ras-related protein Rab-27B                224   2e-58
sp|Q99P74|RB27B_RAT  Ras-related protein Rab-27B                  223   3e-58
sp|Q05974|RAB1A_LYMST  Ras-related protein Rab-1A                 164   3e-40
sp|Q39571|YPTC1_CHLRE  GTP-binding protein YPTC1                  162   6e-40
sp|P22125|RAB1_DISOM  Ras-related protein ORAB-1                  162   6e-40
sp|P62820|RAB1A_HUMAN  Ras-related protein Rab-1A (YPT1-rela...   162   8e-40
>sp|P51159|RB27A_HUMAN Ras-related protein Rab-27A (Rab-27) (GTP-binding protein Ram)
          Length = 221

 Score =  227 bits (578), Expect = 3e-59
 Identities = 107/193 (55%), Positives = 148/193 (76%)
 Frame = +2

Query: 5   NNDDYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGI 184
           ++ DYDYLIK LALGDS VGKT +L +Y +  +   F  TVG+DF+ KRVVY     +G 
Sbjct: 2   SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFRPKRVVYRASGPDGP 61

Query: 185 VEKEARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINS 364
           V +  R++LQLWDTAGQERF+SLT +FFRDAMGFLL+FDLT+E SF+NVR+W+  L++++
Sbjct: 62  VGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121

Query: 365 YSESPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLV 544
           Y E+PDI+L GNK D+  +RVV  E A++ A+++ IPY ETSA++G NI +A   L+DL+
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181

Query: 545 MERINRVVDKSFL 583
           M+R+ R VDKS++
Sbjct: 182 MKRMERCVDKSWI 194
>sp|P23640|RB27A_RAT Ras-related protein Rab-27A (Rab-27) (GTP-binding protein Ram) (Ram
           p25)
          Length = 221

 Score =  226 bits (576), Expect = 4e-59
 Identities = 106/193 (54%), Positives = 146/193 (75%)
 Frame = +2

Query: 5   NNDDYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGI 184
           ++ DYDYLIK LALGDS VGKT +L +Y +  +   F  TVG+DF++KRVVY     +G 
Sbjct: 2   SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGT 61

Query: 185 VEKEARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINS 364
           V +  R++LQLWDTAGQERF+SLT +FFRDAMGFLL+FDLT+E SF+NVR+W+  L++++
Sbjct: 62  VGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121

Query: 365 YSESPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLV 544
           Y E+PDI+L GNK D+  +R V  E A   A+++ IPY ETSA++G NI +A   L+DL+
Sbjct: 122 YCENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISQAIEMLLDLI 181

Query: 545 MERINRVVDKSFL 583
           M+R+ R VDKS++
Sbjct: 182 MKRMERCVDKSWI 194
>sp|O00194|RB27B_HUMAN Ras-related protein Rab-27B (C25KG)
          Length = 218

 Score =  226 bits (575), Expect = 6e-59
 Identities = 106/188 (56%), Positives = 144/188 (76%)
 Frame = +2

Query: 14  DYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGIVEK 193
           DYDYLIKLLALGDS VGKT  L RY +N +   F  TVG+DF++KRVVY  +  NG   K
Sbjct: 5   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 64

Query: 194 EARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINSYSE 373
             +++LQLWDTAGQERF+SLT +FFRDAMGFLL+FDLT + SF+NVR+W+  L+ N+Y E
Sbjct: 65  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124

Query: 374 SPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLVMER 553
           +PDI+L+GNK D+  +R V+   A   A ++ IPY ETSA++G+N++KA  TL+DL+M+R
Sbjct: 125 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 184

Query: 554 INRVVDKS 577
           + + V+K+
Sbjct: 185 MEQCVEKT 192
>sp|Q9ERI2|RB27A_MOUSE Ras-related protein Rab-27A
          Length = 221

 Score =  225 bits (574), Expect = 8e-59
 Identities = 106/193 (54%), Positives = 145/193 (75%)
 Frame = +2

Query: 5   NNDDYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGI 184
           ++ DYDYLIK LALGDS VGKT +L +Y +  +   F  TVG+DF++KRVVY     +G 
Sbjct: 2   SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 61

Query: 185 VEKEARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINS 364
           V +  R++LQLWDTAGQERF+SLT +FFRDAMGFLL+FDLT+E SF+NVR+W+  L++++
Sbjct: 62  VGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121

Query: 365 YSESPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLV 544
           Y E+PDI+L GNK D+  +R V  E A   A+++ IPY ETSA++G NI  A   L+DL+
Sbjct: 122 YCENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 181

Query: 545 MERINRVVDKSFL 583
           M+R+ R VDKS++
Sbjct: 182 MKRMERCVDKSWI 194
>sp|Q99P58|RB27B_MOUSE Ras-related protein Rab-27B
          Length = 218

 Score =  224 bits (570), Expect = 2e-58
 Identities = 104/188 (55%), Positives = 145/188 (77%)
 Frame = +2

Query: 14  DYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGIVEK 193
           DYDYLIKLLALGDS VGKT  L RY +N +   F  TVG+DF++KRVVY  +  +G   K
Sbjct: 5   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 64

Query: 194 EARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINSYSE 373
             +++LQLWDTAGQERF+SLT +FFRDAMGFLL+FDLT + SF+NVR+W+  L+ N+Y E
Sbjct: 65  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124

Query: 374 SPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLVMER 553
           +PDI+L+GNK D+  +R V+   A   A+++ IPY ETSA++G+N++K+  TL+DL+M+R
Sbjct: 125 NPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 184

Query: 554 INRVVDKS 577
           + + V+K+
Sbjct: 185 MEKCVEKT 192
>sp|Q99P74|RB27B_RAT Ras-related protein Rab-27B
          Length = 218

 Score =  223 bits (569), Expect = 3e-58
 Identities = 104/188 (55%), Positives = 145/188 (77%)
 Frame = +2

Query: 14  DYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGIVEK 193
           DYDYLIKLLALGDS VGKT  L RY +N +   F  TVG+DF++KRVVY  +  +G   K
Sbjct: 5   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGSSGK 64

Query: 194 EARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINSYSE 373
             +++LQLWDTAGQERF+SLT +FFRDAMGFLL+FDLT + SF+NVR+W+  L+ N+Y E
Sbjct: 65  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124

Query: 374 SPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLVMER 553
           +PDI+L+GNK D+  +R V+   A   A+++ IPY ETSA++G+N++K+  TL+DL+M+R
Sbjct: 125 NPDIVLIGNKADLLDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 184

Query: 554 INRVVDKS 577
           + + V+K+
Sbjct: 185 MEKCVEKT 192
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A
          Length = 205

 Score =  164 bits (414), Expect = 3e-40
 Identities = 81/191 (42%), Positives = 127/191 (66%), Gaps = 1/191 (0%)
 Frame = +2

Query: 8   NDDYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGIV 187
           N DYDYL KLL +GDS VGK+C+L R+ ++ YT  + +T+GVDFK + +    K      
Sbjct: 5   NPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT----- 59

Query: 188 EKEARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINSY 367
                + LQ+WDTAGQERF+++T S++R A G ++V+D+TD+ SF NV+ WL+  +I+ Y
Sbjct: 60  -----IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ--EIDRY 112

Query: 368 -SESPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLV 544
            SE+ + +LVGNK D+TT++VV +  A  +A +  IP++ETSA +  N+++AF T+   +
Sbjct: 113 ASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172

Query: 545 MERINRVVDKS 577
             R+  +   S
Sbjct: 173 KNRMGPITAAS 183
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1
          Length = 203

 Score =  162 bits (411), Expect = 6e-40
 Identities = 84/184 (45%), Positives = 127/184 (69%), Gaps = 1/184 (0%)
 Frame = +2

Query: 8   NDDYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGIV 187
           N +YDYL KLL +GDS VGK+C+L R+ ++ YT  + +T+GVDFK + V       +G V
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVEL-----DGKV 56

Query: 188 EKEARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINSY 367
            K     LQ+WDTAGQERF+++T S++R A G ++V+D+TD+ SF NV+ WL   +I+ Y
Sbjct: 57  IK-----LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLN--EIDRY 109

Query: 368 -SESPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLV 544
            SE+ + +LVGNK D+T+++VV Y  A +FA E  IP++ETSA +  N+++AF T+   +
Sbjct: 110 ASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169

Query: 545 MERI 556
             R+
Sbjct: 170 KNRM 173
>sp|P22125|RAB1_DISOM Ras-related protein ORAB-1
          Length = 202

 Score =  162 bits (411), Expect = 6e-40
 Identities = 81/184 (44%), Positives = 125/184 (67%), Gaps = 1/184 (0%)
 Frame = +2

Query: 8   NDDYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNGIV 187
           N +YDYL KLL +GDS VGK+C+L R+ ++ YT  + +T+GVDFK + +    K      
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT----- 56

Query: 188 EKEARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKINSY 367
                + LQ+WDTAGQERF+++T S++R A G ++V+D+TD+ SF NV+ WL+  +I+ Y
Sbjct: 57  -----IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ--EIDRY 109

Query: 368 -SESPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLIDLV 544
            SE+ + +LVGNK D+TT++VV Y  A  FA    IP++ETSA +  N+++AF T+   +
Sbjct: 110 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169

Query: 545 MERI 556
            +R+
Sbjct: 170 KKRM 173
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A (YPT1-related protein)
 sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A
 sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A (YPT1-related protein)
 sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A
          Length = 205

 Score =  162 bits (410), Expect = 8e-40
 Identities = 81/186 (43%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
 Frame = +2

Query: 2   SNNDDYDYLIKLLALGDSSVGKTCILQRYINNAYTHDFGNTVGVDFKQKRVVYLPKNNNG 181
           S N +YDYL KLL +GDS VGK+C+L R+ ++ YT  + +T+GVDFK + +    K    
Sbjct: 3   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT--- 59

Query: 182 IVEKEARLNLQLWDTAGQERFKSLTVSFFRDAMGFLLVFDLTDENSFINVRDWLRLLKIN 361
                  + LQ+WDTAGQERF+++T S++R A G ++V+D+TD+ SF NV+ WL+  +I+
Sbjct: 60  -------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ--EID 110

Query: 362 SY-SESPDIILVGNKKDITTRRVVSYENAMSFAKEFNIPYVETSASSGENIDKAFNTLID 538
            Y SE+ + +LVGNK D+TT++VV Y  A  FA    IP++ETSA +  N++++F T+  
Sbjct: 111 RYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 170

Query: 539 LVMERI 556
            + +R+
Sbjct: 171 EIKKRM 176
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,171,413
Number of Sequences: 369166
Number of extensions: 1502453
Number of successful extensions: 5167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4473
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)