Planaria EST Database


DrC_02547

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02547
         (550 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TE73|DYH5_HUMAN  Ciliary dynein heavy chain 5 (Axonemal...   170   2e-42
sp|Q8VHE6|DYH5_MOUSE  Ciliary dynein heavy chain 5 (Axonemal...   169   4e-42
sp|P23098|DYHC_TRIGR  Dynein beta chain, ciliary                   88   2e-17
sp|P39057|DYHC_ANTCR  Dynein beta chain, ciliary                   88   2e-17
sp|Q9NYC9|DYH9_HUMAN  Ciliary dynein heavy chain 9 (Axonemal...    82   1e-15
sp|Q39575|DYHG_CHLRE  Dynein gamma chain, flagellar outer arm      79   7e-15
sp|Q9MBF8|DYH1B_CHLRE  Dynein 1-beta heavy chain, flagellar ...    74   2e-13
sp|Q96DT5|DYH11_HUMAN  Ciliary dynein heavy chain 11 (Axonem...    74   3e-13
sp|Q39565|DYHB_CHLRE  Dynein beta chain, flagellar outer arm       73   5e-13
sp|Q9SMH3|DYH1A_CHLRE  Dynein 1-alpha heavy chain, flagellar...    72   9e-13
>sp|Q8TE73|DYH5_HUMAN Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy chain 5)
            (HL1)
          Length = 4624

 Score =  170 bits (431), Expect = 2e-42
 Identities = 88/138 (63%), Positives = 103/138 (74%)
 Frame = +2

Query: 2    AMRQEVTRAHKGWALDTVVLWNDVTKHMHDEINQPPSEGVYVYGLYLEGAGWDKRNSKLM 181
            AMRQE+TRA+KGWALD +VL N+VTK M D+I+ PP+EGVYVYGLYLEGAGWDKRN KL+
Sbjct: 4494 AMRQEITRANKGWALDNMVLCNEVTKWMKDDISAPPTEGVYVYGLYLEGAGWDKRNMKLI 4553

Query: 182  ESKSKVLFELLPVIHIQAIDISKEGEIPKDLLKNMYQCPVYKKPRRTDLTFIASVYLRCP 361
            ESK KVLFEL+PVI I A     E    +D     Y CP+YKKP RTDL +IA+V LR  
Sbjct: 4554 ESKPKVLFELMPVIRIYA-----ENNTLRD--PRFYSCPIYKKPVRTDLNYIAAVDLR-- 4604

Query: 362  PIKQADHWTLRAVALLCD 415
              +  +HW LR VALLCD
Sbjct: 4605 TAQTPEHWVLRGVALLCD 4622
>sp|Q8VHE6|DYH5_MOUSE Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy chain 5)
            (Mdnah5)
          Length = 4621

 Score =  169 bits (428), Expect = 4e-42
 Identities = 87/138 (63%), Positives = 104/138 (75%)
 Frame = +2

Query: 2    AMRQEVTRAHKGWALDTVVLWNDVTKHMHDEINQPPSEGVYVYGLYLEGAGWDKRNSKLM 181
            AMRQE+TRA+KGWALD +VL N+VTK M D+I+ PP+EGVYVYGLYLEGAGWDKRN KL+
Sbjct: 4491 AMRQEITRANKGWALDNMVLCNEVTKFMKDDISAPPTEGVYVYGLYLEGAGWDKRNMKLI 4550

Query: 182  ESKSKVLFELLPVIHIQAIDISKEGEIPKDLLKNMYQCPVYKKPRRTDLTFIASVYLRCP 361
            ESK KVLFEL+PVI I A     E    +D    +Y CP+YKKP RTDL +IA+V L+  
Sbjct: 4551 ESKPKVLFELMPVIRIFA-----ENNTARD--PRLYCCPIYKKPVRTDLNYIAAVDLK-- 4601

Query: 362  PIKQADHWTLRAVALLCD 415
              +  +HW LR VALLCD
Sbjct: 4602 TAQAPEHWVLRGVALLCD 4619
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary
          Length = 4466

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 51/136 (37%), Positives = 81/136 (59%)
 Frame = +2

Query: 2    AMRQEVTRAHKGWALDTVVLWNDVTKHMHDEINQPPSEGVYVYGLYLEGAGWDKRNSKLM 181
            A+ Q + R ++ W LD + L  DVTK   ++ +  P EG YV+GL++EGA WD + + + 
Sbjct: 4338 AIMQSMARKNE-WPLDKMCLQCDVTKKNKEDFSSApreGSYVHGLFMEGARWDTQTNMIA 4396

Query: 182  ESKSKVLFELLPVIHIQAIDISKEGEIPKDLLKNMYQCPVYKKPRRTDLTFIASVYLRCP 361
            +++ K L   +PVI I+AI + K+        +N+Y+CPVYK  +R   TF+ +  L+  
Sbjct: 4397 DARLKELAPNMPVIFIKAIPVDKQD------TRNIYECPVYKTKQRGP-TFVWTFNLKSK 4449

Query: 362  PIKQADHWTLRAVALL 409
              ++A  WTL  VALL
Sbjct: 4450 --EKAAKWTLAGVALL 4463
>sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary
          Length = 4466

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 51/136 (37%), Positives = 81/136 (59%)
 Frame = +2

Query: 2    AMRQEVTRAHKGWALDTVVLWNDVTKHMHDEINQPPSEGVYVYGLYLEGAGWDKRNSKLM 181
            A+ Q + R ++ W LD + L  DVTK   ++ +  P EG YV+GL++EGA WD + + + 
Sbjct: 4338 AIMQSMARKNE-WPLDKMCLQCDVTKKNKEDFSSApreGSYVHGLFMEGARWDTQTNMIA 4396

Query: 182  ESKSKVLFELLPVIHIQAIDISKEGEIPKDLLKNMYQCPVYKKPRRTDLTFIASVYLRCP 361
            +++ K L   +PVI I+AI + K+        +N+Y+CPVYK  +R   TF+ +  L+  
Sbjct: 4397 DARLKELAPNMPVIFIKAIPVDKQD------TRNIYECPVYKTKQRGP-TFVWTFNLKSK 4449

Query: 362  PIKQADHWTLRAVALL 409
              ++A  WTL  VALL
Sbjct: 4450 --EKAAKWTLAGVALL 4463
>sp|Q9NYC9|DYH9_HUMAN Ciliary dynein heavy chain 9 (Axonemal beta dynein heavy chain 9)
          Length = 4486

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 48/136 (35%), Positives = 74/136 (54%)
 Frame = +2

Query: 2    AMRQEVTRAHKGWALDTVVLWNDVTKHMHDEINQPPSEGVYVYGLYLEGAGWDKRNSKLM 181
            A+ Q   R ++ W LD + L  D+TK   +E   PP EG Y++GL++EGA WD +   + 
Sbjct: 4358 AIMQSTARKNE-WPLDQIALQCDMTKKNREEFRSPpreGAYIHGLFMEGACWDTQAGIIT 4416

Query: 182  ESKSKVLFELLPVIHIQAIDISKEGEIPKDLLKNMYQCPVYKKPRRTDLTFIASVYLRCP 361
            E+K K L   +PV+ I+AI   K+        +++Y CPVYK  +R   T++ +  L+  
Sbjct: 4417 EAKLKDLTPPMPVMFIKAIPADKQD------CRSVYSCPVYKTSQRGP-TYVWTFNLKTK 4469

Query: 362  PIKQADHWTLRAVALL 409
              +    W L  VALL
Sbjct: 4470 --ENPSKWVLAGVALL 4483
>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm
          Length = 4485

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 55/142 (38%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
 Frame = +2

Query: 2    AMRQEVTRAHKG-WALDTVVLWNDVTKHMHD--EINQPPSEGVYVYGLYLEGAGWDKRNS 172
            AM+QEV R H+  WALD VV+ ++VT    D   + +   EGVYVYGLYL+    D R +
Sbjct: 4351 AMKQEVNRKHRDKWALDDVVMSSEVTHRPKDFESLKEGAPEGVYVYGLYLD-LRLDGREN 4409

Query: 173  KLMESKSKVLFELLPVIHIQAIDISKEGEIPKDLLKN-MYQCP-VYKKPRRTDLTFIASV 346
            +LM+S  K LF  LPV+H+       +G + KD  ++ +Y+ P  Y+   R  L FI + 
Sbjct: 4410 RLMDSDPKKLFNPLPVLHV-------DGVLAKDKKRSGLYEAPKPYRVKARKGLNFITTF 4462

Query: 347  YLRCPPIKQADHWTLRAVALLC 412
             +R    K    W L  V +LC
Sbjct: 4463 SVRTEDDK--SKWILPGVGILC 4482
>sp|Q9MBF8|DYH1B_CHLRE Dynein 1-beta heavy chain, flagellar inner arm I1 complex (1-beta
            DHC) (Dynein 1, subspecies f)
          Length = 4513

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
 Frame = +2

Query: 92   EINQPPSEGVYVYGLYLEGAGWDKRNSKLMESKSKVLFELLPVIHIQAIDISKEGEIPKD 271
            EIN PP EGVY+ GL+LEGAGWD  N  L E     L   +P++  + +      E  K 
Sbjct: 4406 EINAPPKEGVYIKGLFLEGAGWDFENGCLCEPNPMELIVPMPILLFRPV------ENKKR 4459

Query: 272  LLKNMYQCPVYKKPRRTDL----TFIASVYLRCPPIKQADHWTLRAVALL 409
              K +Y CP+Y  P RT      +F+ +V LR       DHW +R  ALL
Sbjct: 4460 TAKGIYTCPLYLYPLRTGTRERPSFMINVDLRSGS-ADPDHWIMRGTALL 4508
>sp|Q96DT5|DYH11_HUMAN Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy chain 11)
          Length = 4523

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
 Frame = +2

Query: 2    AMRQEVTRAHKGWALDTVVLWNDVTKHMHDEINQPPSEGVYVYGLYLEGAGWDKRNSKLM 181
            A+ Q + R ++ W LD   L  DVTK   ++   PP EG Y++GL++EGA WD +   ++
Sbjct: 4395 AIMQTMARKNE-WPLDKTRLTADVTKKTKEDYGHPpreGAYLHGLFMEGARWDTQAGTIV 4453

Query: 182  ESKSKVLFELLPVIHIQAIDISKEGEIPKDLLKNMYQCPVYKKPRRTDLTFIASVY-LRC 358
            E++ K L   +PVI  +A  + ++        K  Y+CPVY    RT L   + ++  R 
Sbjct: 4454 EARLKELACPMPVIFAKATPVDRQE------TKQTYECPVY----RTKLRGPSYIWTFRL 4503

Query: 359  PPIKQADHWTLRAVALLCD 415
               ++   W L  VALL +
Sbjct: 4504 KSEEKTAKWVLAGVALLLE 4522
>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm
          Length = 4568

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
 Frame = +2

Query: 14   EVTRAHKGWALDTVVLWNDVTKHMHDEINQPPSEGVYVYGLYLEGAGWDKRNSKLMESKS 193
            + T     W LD  V+  +VTK   D+I     +G +++GL LEGA WD +   L +SK 
Sbjct: 4442 QATARRNDWPLDKTVIITEVTKKQPDQIEANSRDGAFIHGLTLEGARWDDKIGALDDSKP 4501

Query: 194  KVLFELLPVIHIQAIDISKEGEIPKDLLKNMYQCPVY-KKPRRTDLTFIASVYLRCPPIK 370
            K LF  +PVI ++A+   K        +K++Y+CPVY  + R  +  F A +  +   IK
Sbjct: 4502 KELFCPMPVILVRAVTQDKAE------MKDVYKCPVYTTEARFREEVFEAQLKSKHTEIK 4555

Query: 371  QADHWTLRAVALLCD 415
                W L  V L  D
Sbjct: 4556 ----WVLAGVCLFLD 4566
>sp|Q9SMH3|DYH1A_CHLRE Dynein 1-alpha heavy chain, flagellar inner arm I1 complex (1-alpha
            DHC) (Dynein 1, subspecies f)
          Length = 4625

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
 Frame = +2

Query: 32   KGWALDTVVLWNDVTKHMHD-EINQPPSEGVYVYGLYLEGAGWDKRNSKLMESKSKVLFE 208
            KGW LD   L+  VTK     ++++ P  G Y+ GLYLEGA WD   S+L +   KVL  
Sbjct: 4499 KGWPLDKSTLYTKVTKFTDPYQVSERPKYGCYMSGLYLEGAAWDLEASQLRKQDPKVLVN 4558

Query: 209  LLPVIHIQAIDISKEGEIPKDLLKNMYQCPVYKKPRRTDLTFIASVY-LRCPPIKQADHW 385
             LP++ +  I+ +K        L N ++ PVY    R +   +  V+       + + HW
Sbjct: 4559 ELPILQVIPIEANKL------KLANTFRAPVYVTQARRNAMGVGLVFDADLASAEHSSHW 4612

Query: 386  TLRAVALL 409
             L+ VAL+
Sbjct: 4613 VLQGVALV 4620
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,017,519
Number of Sequences: 369166
Number of extensions: 1260545
Number of successful extensions: 3104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3090
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)