Planaria EST Database


DrC_02546

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02546
         (843 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O02626|AEX3_CAEEL  Regulator of presynaptic activity aex-3     238   2e-62
sp|Q08100|VGLD_BHV1S  Glycoprotein D precursor (Glycoprotein...    32   2.2  
sp|O89091|KLF10_MOUSE  Transforming growth factor-beta-induc...    31   4.9  
sp|P29603|FER_PYRFU  Ferredoxin                                    30   8.3  
sp|P97879|GRIP1_RAT  Glutamate receptor interacting protein ...    30   8.3  
>sp|O02626|AEX3_CAEEL Regulator of presynaptic activity aex-3
          Length = 1409

 Score =  238 bits (606), Expect = 2e-62
 Identities = 117/267 (43%), Positives = 172/267 (64%)
 Frame = +1

Query: 1    QERDMVGMDQGTVEMMKRYSTLSRVERKRLQLDEDRLLSTXXXXXXXXXXXXXXDVNDIR 180
            QER++VGMDQ   EM+ RYS L+  E+KRL+L+EDRLLST                  ++
Sbjct: 1103 QEREIVGMDQEPSEMIDRYSALNDSEKKRLELEEDRLLSTLLHNMTAYMIMCGTGQKALQ 1162

Query: 181  NKIRRILASCHLGLHYSQQINCLLDQLHKLQANDIDLKPMVSRLMQKKSFTVHWGTDPSG 360
             K+RR+L   H+GL  S++IN LLD+L   Q N I LKP+ SRL+QK+SFTV  G    G
Sbjct: 1163 QKVRRLLGKAHIGLVCSKEINKLLDELPSTQGNFIPLKPLGSRLVQKQSFTVCPGQSSDG 1222

Query: 361  DILFFEVFDDCIILRSISGAIVDRWWFEKIIHFSFCPKTKVAVFWMKDGSKIAHNKLYTK 540
             ++F EV DD ++LRSI+GA  +RWW+E++++ ++ PKTK+   W +   K+  +K +TK
Sbjct: 1223 QMMFMEVCDDAVVLRSITGAATERWWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTK 1282

Query: 541  KCKELYNCVKETMERAAARTMSGGDPSPEMGGEFPIKDRNTEEEGILQVCMEGLSINFPS 720
            KC+ELY C+K  MERAAAR     +    +GGEFP+ D  T + G+LQV  +G+++ F  
Sbjct: 1283 KCRELYQCMKAAMERAAARGKVNVE-GRALGGEFPVHDTETNQGGLLQVRCDGVAVIFAH 1341

Query: 721  KQHFVPIAQIRRCLTHKANIFIIEIID 801
             Q F+ ++ I++C T   N+F++E  D
Sbjct: 1342 NQIFIGLSNIKKCNTFGGNVFLLEEFD 1368
>sp|Q08100|VGLD_BHV1S Glycoprotein D precursor (Glycoprotein IV)
          Length = 417

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 571 ETMERAAARTMSGGDPSPEMGGEFPIKDRNTEEEG 675
           ET + AA R  +GG P PE  GE P  + N   EG
Sbjct: 289 ETEDGAAGREGNGGPPGPEGDGESPTPEANGGAEG 323
>sp|O89091|KLF10_MOUSE Transforming growth factor-beta-inducible early growth response
           protein 1 (TGFB-inducible early growth response protein
           1) (TIEG-1) (Krueppel-like factor 10) (GDNF inducible
           factor) (Transcription factor GIF) (mGIF)
          Length = 479

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 674 PSSSVLRSLIGNSPPISGDGSPPLMVLAAALSIVSLTQLYSSL 546
           PSS V +S++ +SP +S  G PPL V+   + + +   L S++
Sbjct: 246 PSSPVQKSVLVSSPTVSTGGVPPLPVICQMVPLPANNSLVSTV 288
>sp|P29603|FER_PYRFU Ferredoxin
          Length = 67

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 460 SFCPKTKVAVFWMKDGSKIAHNKLYTKKCKELYNCVKETME 582
           S CP     VF M D  K A  K+   + +ELYNC KE ME
Sbjct: 20  SLCPD----VFEMNDEGK-AQPKVEVIEDEELYNCAKEAME 55
>sp|P97879|GRIP1_RAT Glutamate receptor interacting protein 1 (GRIP1 protein) (AMPA
           receptor interacting protein GRIP1)
          Length = 1112

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 683 CKIPSSSVLRSLIGNSPPISGDGSPPLMVLAAALSIVSLTQLYSSLH 543
           C++P+    ++L  NSPP     S P  + A +LS +++  L  SL+
Sbjct: 383 CRVPALGFPKALTPNSPPAMVSSSSPTSMSAYSLSSLNMGTLPRSLY 429
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,350,640
Number of Sequences: 369166
Number of extensions: 2089411
Number of successful extensions: 5290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5287
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)