Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_O03
(843 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02626|AEX3_CAEEL Regulator of presynaptic activity aex-3 238 2e-62
sp|Q08100|VGLD_BHV1S Glycoprotein D precursor (Glycoprotein... 32 2.2
sp|O89091|KLF10_MOUSE Transforming growth factor-beta-induc... 31 4.9
sp|P29603|FER_PYRFU Ferredoxin 30 8.3
sp|P97879|GRIP1_RAT Glutamate receptor interacting protein ... 30 8.3
>sp|O02626|AEX3_CAEEL Regulator of presynaptic activity aex-3
Length = 1409
Score = 238 bits (606), Expect = 2e-62
Identities = 117/267 (43%), Positives = 172/267 (64%)
Frame = +1
Query: 1 QERDMVGMDQGTVEMMKRYSTLSRVERKRLQLDEDRLLSTXXXXXXXXXXXXXXDVNDIR 180
QER++VGMDQ EM+ RYS L+ E+KRL+L+EDRLLST ++
Sbjct: 1103 QEREIVGMDQEPSEMIDRYSALNDSEKKRLELEEDRLLSTLLHNMTAYMIMCGTGQKALQ 1162
Query: 181 NKIRRILASCHLGLHYSQQINCLLDQLHKLQANDIDLKPMVSRLMQKKSFTVHWGTDPSG 360
K+RR+L H+GL S++IN LLD+L Q N I LKP+ SRL+QK+SFTV G G
Sbjct: 1163 QKVRRLLGKAHIGLVCSKEINKLLDELPSTQGNFIPLKPLGSRLVQKQSFTVCPGQSSDG 1222
Query: 361 DILFFEVFDDCIILRSISGAIVDRWWFEKIIHFSFCPKTKVAVFWMKDGSKIAHNKLYTK 540
++F EV DD ++LRSI+GA +RWW+E++++ ++ PKTK+ W + K+ +K +TK
Sbjct: 1223 QMMFMEVCDDAVVLRSITGAATERWWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTK 1282
Query: 541 KCKELYNCVKETMERAAARTMSGGDPSPEMGGEFPIKDRNTEEEGILQVCMEGLSINFPS 720
KC+ELY C+K MERAAAR + +GGEFP+ D T + G+LQV +G+++ F
Sbjct: 1283 KCRELYQCMKAAMERAAARGKVNVE-GRALGGEFPVHDTETNQGGLLQVRCDGVAVIFAH 1341
Query: 721 KQHFVPIAQIRRCLTHKANIFIIEIID 801
Q F+ ++ I++C T N+F++E D
Sbjct: 1342 NQIFIGLSNIKKCNTFGGNVFLLEEFD 1368
>sp|Q08100|VGLD_BHV1S Glycoprotein D precursor (Glycoprotein IV)
Length = 417
Score = 32.0 bits (71), Expect = 2.2
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 571 ETMERAAARTMSGGDPSPEMGGEFPIKDRNTEEEG 675
ET + AA R +GG P PE GE P + N EG
Sbjct: 289 ETEDGAAGREGNGGPPGPEGDGESPTPEANGGAEG 323
>sp|O89091|KLF10_MOUSE Transforming growth factor-beta-inducible early growth response
protein 1 (TGFB-inducible early growth response protein
1) (TIEG-1) (Krueppel-like factor 10) (GDNF inducible
factor) (Transcription factor GIF) (mGIF)
Length = 479
Score = 30.8 bits (68), Expect = 4.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 674 PSSSVLRSLIGNSPPISGDGSPPLMVLAAALSIVSLTQLYSSL 546
PSS V +S++ +SP +S G PPL V+ + + + L S++
Sbjct: 246 PSSPVQKSVLVSSPTVSTGGVPPLPVICQMVPLPANNSLVSTV 288
>sp|P29603|FER_PYRFU Ferredoxin
Length = 67
Score = 30.0 bits (66), Expect = 8.3
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 460 SFCPKTKVAVFWMKDGSKIAHNKLYTKKCKELYNCVKETME 582
S CP VF M D K A K+ + +ELYNC KE ME
Sbjct: 20 SLCPD----VFEMNDEGK-AQPKVEVIEDEELYNCAKEAME 55
>sp|P97879|GRIP1_RAT Glutamate receptor interacting protein 1 (GRIP1 protein) (AMPA
receptor interacting protein GRIP1)
Length = 1112
Score = 30.0 bits (66), Expect = 8.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 683 CKIPSSSVLRSLIGNSPPISGDGSPPLMVLAAALSIVSLTQLYSSLH 543
C++P+ ++L NSPP S P + A +LS +++ L SL+
Sbjct: 383 CRVPALGFPKALTPNSPPAMVSSSSPTSMSAYSLSSLNMGTLPRSLY 429
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,350,640
Number of Sequences: 369166
Number of extensions: 2089411
Number of successful extensions: 5290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5287
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)