Planaria EST Database


DrC_02536

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02536
         (875 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75882|ATRN_HUMAN  Attractin precursor (Mahogany homolog)...    39   0.025
sp|Q99J86|ATRN_RAT  Attractin precursor (Zitter protein)           39   0.025
sp|Q9WU60|ATRN_MOUSE  Attractin precursor (Mahogany protein)       39   0.025
sp|P29739|OMPH_PHOPR  Porin-like protein H precursor (37 kDa...    35   0.27 
sp|Q9JH49|VE1_HPV69  Replication protein E1                        32   1.8  
sp|P51567|AFC2_ARATH  Protein kinase AFC2                          32   1.8  
sp|P41467|Y066_NPVAC  HYPOTHETICAL 94.0 KD PROTEIN IN POL-LE...    31   4.0  
sp|P58540|ARAA_YERPE  L-arabinose isomerase                        31   5.2  
sp|Q66AF8|ARAA_YERPS  L-arabinose isomerase                        31   5.2  
sp|P38485|VGNM_APMV  Genome polyprotein M (RNA2 polyprotein)...    30   6.7  
>sp|O75882|ATRN_HUMAN Attractin precursor (Mahogany homolog) (DPPT-L)
          Length = 1429

 Score = 38.5 bits (88), Expect = 0.025
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
 Frame = -1

Query: 596  LNRSCDFSFCIVIQF*SSL*LAFSNNFCALNHILSWSKCDT---FFIPAITSTRINFTWI 426
            L  +C ++  I  QF  SL       + A+N + +  + +     FI A  +  +N TW 
Sbjct: 1151 LRGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWA 1210

Query: 425  SSINA-SGTGNIWRYISKISLSKGSNKFSLSSATVFIF*PFKHHRGIPFVITTDQFVCVI 249
            +S +A +  G     +SK ++ +  + FS           F++H  I F +    F    
Sbjct: 1211 ASFSAGTQAGEEMPVVSKTNIKEYKDSFSNEKFD------FRNHPNITFFVYVSNFTW-- 1262

Query: 248  HAGSMNREPIDHSYFFSIHSNQFQYCHFFVNI--VFISL----SFFWRICQ 114
                    PI     FS HSN      FFV     F+SL    +  W+I Q
Sbjct: 1263 --------PIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQ 1305
>sp|Q99J86|ATRN_RAT Attractin precursor (Zitter protein)
          Length = 1432

 Score = 38.5 bits (88), Expect = 0.025
 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
 Frame = -1

Query: 596  LNRSCDFSFCIVIQF*SSL*LAFSNNFCALNHILSWSKCDT---FFIPAITSTRINFTWI 426
            L  +C ++  I  QF  SL       + A+N + +  + +     FI A  +  +N TW 
Sbjct: 1154 LKGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWA 1213

Query: 425  SSINA-SGTGNIWRYISKISLSKGSNKFSLSSATVFIF*PFKHHRGIPFVITTDQFVCVI 249
            +S  A + TG     +SK ++ +  + FS           F++H  I F +    F    
Sbjct: 1214 TSFPAGTQTGEEVPVVSKTNIKEYKDSFSNEKFD------FRNHPNITFFVYVSNFTW-- 1265

Query: 248  HAGSMNREPIDHSYFFSIHSNQFQYCHFFVNI--VFISL----SFFWRICQ 114
                    PI     FS HSN      FFV     F+SL    +  W+I Q
Sbjct: 1266 --------PIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQ 1308
>sp|Q9WU60|ATRN_MOUSE Attractin precursor (Mahogany protein)
          Length = 1428

 Score = 38.5 bits (88), Expect = 0.025
 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
 Frame = -1

Query: 596  LNRSCDFSFCIVIQF*SSL*LAFSNNFCALNHILSWSKCDT---FFIPAITSTRINFTWI 426
            L  +C ++  I  QF  SL       + A+N + +  + +     FI A  +  +N TW 
Sbjct: 1150 LKGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWA 1209

Query: 425  SSINA-SGTGNIWRYISKISLSKGSNKFSLSSATVFIF*PFKHHRGIPFVITTDQFVCVI 249
            +S  A + TG     +SK ++ +  + FS           F++H  I F +    F    
Sbjct: 1210 TSFPAGTQTGEEVPVVSKTNIKEYKDSFSNEKFD------FRNHPNITFFVYVSNFTW-- 1261

Query: 248  HAGSMNREPIDHSYFFSIHSNQFQYCHFFVNI--VFISL----SFFWRICQ 114
                    PI     FS HSN      FFV     F+SL    +  W+I Q
Sbjct: 1262 --------PIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQ 1304
>sp|P29739|OMPH_PHOPR Porin-like protein H precursor (37 kDa outer membrane protein)
          Length = 326

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +3

Query: 495 KDMVESTKIIGERQLQAALKLYN--NAKTEITGP--IQYKHQFKQMTNLTVKLPDGSWGK 662
           K +V    +       A + LY+    KT+++G   +QY+  FK+ ++  +++ DG    
Sbjct: 3   KTLVALAILTAAGSANAGINLYDADGVKTDLSGAAEVQYRQTFKEDSDAELRMDDGDLAV 62

Query: 663 TCKPAMGYSFAAGTTDGPGAFDFKQGTVTTNPFW 764
               A+  S  A       AF+F+ G VT +  W
Sbjct: 63  NTTVAISDSLNAVAA---VAFEFEDGKVTNDELW 93
>sp|Q9JH49|VE1_HPV69 Replication protein E1
          Length = 634

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 189 GMDGEEIGMINWFAVHGTSMNNTNELISGDNKGYAS 296
           G DGE +G   WF+V      +T E IS D   Y+S
Sbjct: 5   GTDGEGLGCTGWFSVEAIVEKHTGETISEDEIEYSS 40
>sp|P51567|AFC2_ARATH Protein kinase AFC2
          Length = 427

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 90  INRSPTSYLANPPEERQRYKYDVDKEMTVLKLVGMDGEEIGMINWFAVHGTSMNNTNEL 266
           ++  P +++   P +R R  +DV  + T  ++    G+EIG I+ FA  G   +N++ L
Sbjct: 6   VHEFPHTHMDRRPRKRARLGWDVLPQATKAQVGMFCGQEIGNISSFASSGAPSDNSSSL 64
>sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LEF3 INTERGENIC REGION
          Length = 808

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 87  NINRSPTSYLANPPEERQRYKYDVDKEMTVLKLVGMDGEEIGMIN--WFAVHGTSMNNTN 260
           N+NR   S ++   E  QRYK D    M + + V +  +EI M N  +  +        N
Sbjct: 458 NLNRELRSSISKIDETTQRYKLDAKDIMELKQSVSIKDQEIAMKNAQYLELSAIYQQTVN 517

Query: 261 ELISGDNK 284
           EL +  N+
Sbjct: 518 ELTATKNE 525
>sp|P58540|ARAA_YERPE L-arabinose isomerase
          Length = 500

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 179 EIGWNGWRRNRNDQLVRGSWNQHE*HKRIDQW 274
           E G+ G R  +   ++ G W   E H+RI QW
Sbjct: 132 EFGFIGARMRQQHSVITGHWQDKEAHQRIGQW 163
>sp|Q66AF8|ARAA_YERPS L-arabinose isomerase
          Length = 500

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 179 EIGWNGWRRNRNDQLVRGSWNQHE*HKRIDQW 274
           E G+ G R  +   ++ G W   E H+RI QW
Sbjct: 132 EFGFIGARMRQQHSVITGHWQDKEAHQRIGQW 163
>sp|P38485|VGNM_APMV Genome polyprotein M (RNA2 polyprotein) [Contains: Movement protein
            (MP); Large coat protein (LCP); Small coat protein (SCP)]
          Length = 997

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
 Frame = -1

Query: 665  CFAPTTIGQFNC*IRHLFKLMLILNRS-CDFSFCIVIQF*SSL*LAFSNN--------FC 513
            C A T  G F   +    KL+ I N S C ++  +V+        A SN+        FC
Sbjct: 747  CIASTICGDFQVGV----KLLSIENYSPCGYNPGLVVASTIVQNTAGSNSTSLLAWPQFC 802

Query: 512  ALNHILSWSKCDTFFIPAITSTRINFTWIS------SINASGTGNIWRYI 381
            +   I  WS+     IP + +T++NF   S      +++A+ +G  WR++
Sbjct: 803  S-PCINVWSEFCALDIPVVDTTKVNFAQYSLDLVNPTVSANASGRNWRFV 851
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,834,726
Number of Sequences: 369166
Number of extensions: 2538132
Number of successful extensions: 6592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6589
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)