Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_K11
(875 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75882|ATRN_HUMAN Attractin precursor (Mahogany homolog)... 39 0.025
sp|Q99J86|ATRN_RAT Attractin precursor (Zitter protein) 39 0.025
sp|Q9WU60|ATRN_MOUSE Attractin precursor (Mahogany protein) 39 0.025
sp|P29739|OMPH_PHOPR Porin-like protein H precursor (37 kDa... 35 0.27
sp|Q9JH49|VE1_HPV69 Replication protein E1 32 1.8
sp|P51567|AFC2_ARATH Protein kinase AFC2 32 1.8
sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LE... 31 4.0
sp|P58540|ARAA_YERPE L-arabinose isomerase 31 5.2
sp|Q66AF8|ARAA_YERPS L-arabinose isomerase 31 5.2
sp|P38485|VGNM_APMV Genome polyprotein M (RNA2 polyprotein)... 30 6.7
>sp|O75882|ATRN_HUMAN Attractin precursor (Mahogany homolog) (DPPT-L)
Length = 1429
Score = 38.5 bits (88), Expect = 0.025
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Frame = -1
Query: 596 LNRSCDFSFCIVIQF*SSL*LAFSNNFCALNHILSWSKCDT---FFIPAITSTRINFTWI 426
L +C ++ I QF SL + A+N + + + + FI A + +N TW
Sbjct: 1151 LRGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWA 1210
Query: 425 SSINA-SGTGNIWRYISKISLSKGSNKFSLSSATVFIF*PFKHHRGIPFVITTDQFVCVI 249
+S +A + G +SK ++ + + FS F++H I F + F
Sbjct: 1211 ASFSAGTQAGEEMPVVSKTNIKEYKDSFSNEKFD------FRNHPNITFFVYVSNFTW-- 1262
Query: 248 HAGSMNREPIDHSYFFSIHSNQFQYCHFFVNI--VFISL----SFFWRICQ 114
PI FS HSN FFV F+SL + W+I Q
Sbjct: 1263 --------PIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQ 1305
>sp|Q99J86|ATRN_RAT Attractin precursor (Zitter protein)
Length = 1432
Score = 38.5 bits (88), Expect = 0.025
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Frame = -1
Query: 596 LNRSCDFSFCIVIQF*SSL*LAFSNNFCALNHILSWSKCDT---FFIPAITSTRINFTWI 426
L +C ++ I QF SL + A+N + + + + FI A + +N TW
Sbjct: 1154 LKGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWA 1213
Query: 425 SSINA-SGTGNIWRYISKISLSKGSNKFSLSSATVFIF*PFKHHRGIPFVITTDQFVCVI 249
+S A + TG +SK ++ + + FS F++H I F + F
Sbjct: 1214 TSFPAGTQTGEEVPVVSKTNIKEYKDSFSNEKFD------FRNHPNITFFVYVSNFTW-- 1265
Query: 248 HAGSMNREPIDHSYFFSIHSNQFQYCHFFVNI--VFISL----SFFWRICQ 114
PI FS HSN FFV F+SL + W+I Q
Sbjct: 1266 --------PIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQ 1308
>sp|Q9WU60|ATRN_MOUSE Attractin precursor (Mahogany protein)
Length = 1428
Score = 38.5 bits (88), Expect = 0.025
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Frame = -1
Query: 596 LNRSCDFSFCIVIQF*SSL*LAFSNNFCALNHILSWSKCDT---FFIPAITSTRINFTWI 426
L +C ++ I QF SL + A+N + + + + FI A + +N TW
Sbjct: 1150 LKGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWA 1209
Query: 425 SSINA-SGTGNIWRYISKISLSKGSNKFSLSSATVFIF*PFKHHRGIPFVITTDQFVCVI 249
+S A + TG +SK ++ + + FS F++H I F + F
Sbjct: 1210 TSFPAGTQTGEEVPVVSKTNIKEYKDSFSNEKFD------FRNHPNITFFVYVSNFTW-- 1261
Query: 248 HAGSMNREPIDHSYFFSIHSNQFQYCHFFVNI--VFISL----SFFWRICQ 114
PI FS HSN FFV F+SL + W+I Q
Sbjct: 1262 --------PIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQ 1304
>sp|P29739|OMPH_PHOPR Porin-like protein H precursor (37 kDa outer membrane protein)
Length = 326
Score = 35.0 bits (79), Expect = 0.27
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +3
Query: 495 KDMVESTKIIGERQLQAALKLYN--NAKTEITGP--IQYKHQFKQMTNLTVKLPDGSWGK 662
K +V + A + LY+ KT+++G +QY+ FK+ ++ +++ DG
Sbjct: 3 KTLVALAILTAAGSANAGINLYDADGVKTDLSGAAEVQYRQTFKEDSDAELRMDDGDLAV 62
Query: 663 TCKPAMGYSFAAGTTDGPGAFDFKQGTVTTNPFW 764
A+ S A AF+F+ G VT + W
Sbjct: 63 NTTVAISDSLNAVAA---VAFEFEDGKVTNDELW 93
>sp|Q9JH49|VE1_HPV69 Replication protein E1
Length = 634
Score = 32.3 bits (72), Expect = 1.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 189 GMDGEEIGMINWFAVHGTSMNNTNELISGDNKGYAS 296
G DGE +G WF+V +T E IS D Y+S
Sbjct: 5 GTDGEGLGCTGWFSVEAIVEKHTGETISEDEIEYSS 40
>sp|P51567|AFC2_ARATH Protein kinase AFC2
Length = 427
Score = 32.3 bits (72), Expect = 1.8
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 90 INRSPTSYLANPPEERQRYKYDVDKEMTVLKLVGMDGEEIGMINWFAVHGTSMNNTNEL 266
++ P +++ P +R R +DV + T ++ G+EIG I+ FA G +N++ L
Sbjct: 6 VHEFPHTHMDRRPRKRARLGWDVLPQATKAQVGMFCGQEIGNISSFASSGAPSDNSSSL 64
>sp|P41467|Y066_NPVAC HYPOTHETICAL 94.0 KD PROTEIN IN POL-LEF3 INTERGENIC REGION
Length = 808
Score = 31.2 bits (69), Expect = 4.0
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 87 NINRSPTSYLANPPEERQRYKYDVDKEMTVLKLVGMDGEEIGMIN--WFAVHGTSMNNTN 260
N+NR S ++ E QRYK D M + + V + +EI M N + + N
Sbjct: 458 NLNRELRSSISKIDETTQRYKLDAKDIMELKQSVSIKDQEIAMKNAQYLELSAIYQQTVN 517
Query: 261 ELISGDNK 284
EL + N+
Sbjct: 518 ELTATKNE 525
>sp|P58540|ARAA_YERPE L-arabinose isomerase
Length = 500
Score = 30.8 bits (68), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 179 EIGWNGWRRNRNDQLVRGSWNQHE*HKRIDQW 274
E G+ G R + ++ G W E H+RI QW
Sbjct: 132 EFGFIGARMRQQHSVITGHWQDKEAHQRIGQW 163
>sp|Q66AF8|ARAA_YERPS L-arabinose isomerase
Length = 500
Score = 30.8 bits (68), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 179 EIGWNGWRRNRNDQLVRGSWNQHE*HKRIDQW 274
E G+ G R + ++ G W E H+RI QW
Sbjct: 132 EFGFIGARMRQQHSVITGHWQDKEAHQRIGQW 163
>sp|P38485|VGNM_APMV Genome polyprotein M (RNA2 polyprotein) [Contains: Movement protein
(MP); Large coat protein (LCP); Small coat protein (SCP)]
Length = 997
Score = 30.4 bits (67), Expect = 6.7
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Frame = -1
Query: 665 CFAPTTIGQFNC*IRHLFKLMLILNRS-CDFSFCIVIQF*SSL*LAFSNN--------FC 513
C A T G F + KL+ I N S C ++ +V+ A SN+ FC
Sbjct: 747 CIASTICGDFQVGV----KLLSIENYSPCGYNPGLVVASTIVQNTAGSNSTSLLAWPQFC 802
Query: 512 ALNHILSWSKCDTFFIPAITSTRINFTWIS------SINASGTGNIWRYI 381
+ I WS+ IP + +T++NF S +++A+ +G WR++
Sbjct: 803 S-PCINVWSEFCALDIPVVDTTKVNFAQYSLDLVNPTVSANASGRNWRFV 851
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,834,726
Number of Sequences: 369166
Number of extensions: 2538132
Number of successful extensions: 6592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6589
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)