Planaria EST Database


DrC_02531

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02531
         (840 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98175|RBM10_HUMAN  RNA-binding protein 10 (RNA-binding m...    56   1e-07
sp|P52756|RBM5_HUMAN  RNA-binding protein 5 (RNA-binding mot...    55   2e-07
sp|P19338|NUCL_HUMAN  Nucleolin (Protein C23)                      53   9e-07
sp|P15771|NUCL_CHICK  Nucleolin (Protein C23)                      47   5e-05
sp|P09405|NUCL_MOUSE  Nucleolin (Protein C23)                      47   7e-05
sp|P13383|NUCL_RAT  Nucleolin (Protein C23)                        47   7e-05
sp|P08199|NUCL_MESAU  Nucleolin (Protein C23)                      47   7e-05
sp|P20397|NUCL_XENLA  Nucleolin (Protein C23)                      44   7e-04
sp|O04425|FCA_ARATH  Flowering time control protein FCA            39   0.014
sp|Q8R3C6|RBM19_MOUSE  Probable RNA-binding protein 19 (RNA-...    38   0.030
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
          Length = 929

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 31/86 (36%), Positives = 47/86 (54%)
 Frame = +3

Query: 60  QEPYEEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIA 239
           +E  E+ SN +M+R LP   +EDDIR  L         VRL++++ +G ++G AFVEF  
Sbjct: 121 EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 180

Query: 240 VNDAKTLMYDTKGELDISGYIGKLSY 317
           + DA   M   +  L+I G    + Y
Sbjct: 181 LQDATRWMEANQHSLNILGQKVSMHY 206

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +3

Query: 63  EPYEEPSN-TIMIRGLPSHISEDDIRVSLDDTQANYVA-----VRLLKDRRTGSNKGIAF 224
           EP  E +N TI++R L  H + D I  +L    A Y       VR++KD++T  N+G AF
Sbjct: 292 EPSSENANDTIILRNLNPHSTMDSILGAL----APYAVLSSSNVRVIKDKQTQLNRGFAF 347

Query: 225 VEFIAVNDAKTL 260
           ++   +  A+ L
Sbjct: 348 IQLSTIEAAQLL 359
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding motif protein 5) (Putative tumor
           suppressor LUCA15) (G15 protein)
          Length = 815

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +3

Query: 72  EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVA-VRLLKDRRTGSNKGIAFVEFIAVND 248
           E  S TIM+RGLP  I+E DIR  ++  +    A VRL+K R+TG ++G AFVEF  + D
Sbjct: 94  ERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQD 152

Query: 249 AKTLMYDTKGELDISG 296
           A + M   + +L I G
Sbjct: 153 ATSWMEANQKKLVIQG 168

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +3

Query: 84  NTIMIRGLPSHISEDDIRVSLDDTQANYVA-VRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
           +TI++R +  H   D I  +L    +  V  +RL+KD++T  N+G AFV+  +  DA  L
Sbjct: 231 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQL 290

Query: 261 M 263
           +
Sbjct: 291 L 291
>sp|P19338|NUCL_HUMAN Nucleolin (Protein C23)
          Length = 707

 Score = 53.1 bits (126), Expect = 9e-07
 Identities = 28/71 (39%), Positives = 43/71 (60%)
 Frame = +3

Query: 75  EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
           +PS T+ ++GL    +E+ ++ S D +    V  R++ DR TGS+KG  FV+F +  DAK
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 624

Query: 255 TLMYDTKGELD 287
             M D  GE+D
Sbjct: 625 EAMED--GEID 633

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 31/121 (25%), Positives = 60/121 (49%)
 Frame = +3

Query: 72  EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
           E  + T++ + LP  +++D+++   +D       +RL+   + G +KGIA++EF    DA
Sbjct: 389 ERDARTLLAKNLPYKVTQDELKEVFEDA----AEIRLVS--KDGKSKGIAYIEFKTEADA 442

Query: 252 KTLMYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLS 431
           +    + +G  +I G    L Y     +  D Y   K ++W  E  + T++L  +S   +
Sbjct: 443 EKTFEEKQG-TEIDGRSISLYYTGEKGQNQD-YRGGKNSTWSGE--SKTLVLSNLSYSAT 498

Query: 432 E 434
           E
Sbjct: 499 E 499
>sp|P15771|NUCL_CHICK Nucleolin (Protein C23)
          Length = 694

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +3

Query: 69  YEEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVND 248
           + + S T+ +RGL    +E+ +R S + +    ++ R++ DR TGS+KG  FV+F +  D
Sbjct: 548 FNQQSKTLFVRGLSEDTTEETLRESFEGS----ISARIVTDRDTGSSKGFGFVDFSSPED 603

Query: 249 AKTLMYDTK-GELD 287
           AK      + GE+D
Sbjct: 604 AKAAKEAMEDGEID 617

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 28/121 (23%), Positives = 64/121 (52%)
 Frame = +3

Query: 72  EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
           E  + T+ ++ LP  ++ED+++   +    N + VRL+ ++  GS+KG+A++EF    +A
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFE----NALEVRLVLNKE-GSSKGMAYIEFKTEAEA 421

Query: 252 KTLMYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLS 431
           +  + + +G  ++ G    + Y      E  + +++K      E+ + T+++  +S   S
Sbjct: 422 EKALEEKQG-TEVDGRAMVIDY----TGEKSQQESQKGGG---ERESKTLIVNNLSYAAS 473

Query: 432 E 434
           E
Sbjct: 474 E 474
>sp|P09405|NUCL_MOUSE Nucleolin (Protein C23)
          Length = 707

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 75  EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
           +PS T+ ++GL    +E+ ++ S + +    V  R++ DR TGS+KG  FV+F +  DAK
Sbjct: 566 QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 621

Query: 255 TLMYDTK-GELD 287
                 + GE+D
Sbjct: 622 AAKEAMEDGEID 633

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 28/104 (26%), Positives = 55/104 (52%)
 Frame = +3

Query: 81  SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
           + T++ + L  +I+ED+++   +D     + +RL+   + G +KGIA++EF +  DA+  
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFEDA----MEIRLVS--QDGKSKGIAYIEFKSEADAEKN 447

Query: 261 MYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPT 392
           + + +G  +I G    L Y     +  +R    KT++W  E  T
Sbjct: 448 LEEKQG-AEIDGRSVSLYYTGEKGQRQER--TGKTSTWSGESKT 488
>sp|P13383|NUCL_RAT Nucleolin (Protein C23)
          Length = 713

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 75  EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
           +PS T+ ++GL    +E+ ++ S + +    V  R++ DR TGS+KG  FV+F +  DAK
Sbjct: 572 QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 627

Query: 255 TLMYDTK-GELD 287
                 + GE+D
Sbjct: 628 AAKEAMEDGEID 639

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 31/118 (26%), Positives = 62/118 (52%)
 Frame = +3

Query: 81  SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
           + T++ + L  +I+ED+++   +D     V +RL+   + G +KGIA++EF +  DA+  
Sbjct: 396 ARTLLAKNLSFNITEDELKEVFEDA----VEIRLVS--QDGRSKGIAYIEFKSEADAEKN 449

Query: 261 MYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLSE 434
           + + +G  +I G    L Y     +  +R    K ++W  E  + T++L  +S   +E
Sbjct: 450 LEEKQG-AEIDGRSVSLYYTGEKGQRQER--TGKNSTWSGE--SKTLVLSNLSYSATE 502
>sp|P08199|NUCL_MESAU Nucleolin (Protein C23)
          Length = 714

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 75  EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
           +PS T+ ++GL    +E+ ++ S + +    V  R++ DR TGS+KG  FV+F +  DAK
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 624

Query: 255 TLMYDTK-GELD 287
                 + GE+D
Sbjct: 625 AAKEAMEDGEID 636

 Score = 37.0 bits (84), Expect = 0.068
 Identities = 30/118 (25%), Positives = 62/118 (52%)
 Frame = +3

Query: 81  SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
           + T++ + L  +I+ED+++   +D     + +RL+   + G +KGIA++EF +  DA+  
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFEDA----LEIRLVS--QDGKSKGIAYIEFKSEADAEKN 446

Query: 261 MYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLSE 434
           + + +G  +I G    L Y     +  +R    K ++W  E  + T++L  +S   +E
Sbjct: 447 LEEKQG-AEIDGRSVSLYYTGEKGQRQER--TGKNSTWSGE--SKTLVLSNLSYSATE 499
>sp|P20397|NUCL_XENLA Nucleolin (Protein C23)
          Length = 651

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +3

Query: 81  SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
           S T+ +RGL    +E+ ++ + D +    V  R++ DR TG++KG  FV+F    DAK  
Sbjct: 502 SKTLFVRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDFSTAEDAKAA 557

Query: 261 MYDTK-GELD 287
               + GE+D
Sbjct: 558 KEAMEDGEID 567

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 19/69 (27%), Positives = 38/69 (55%)
 Frame = +3

Query: 72  EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
           E  S T+ ++ +P   + ++++   ++  A  + +   KD   GSNKGIA+VEF   ++A
Sbjct: 321 ERDSRTLFVKNIPYSTTVEELQEIFEN--AKDIRIPTGKD---GSNKGIAYVEFSNEDEA 375

Query: 252 KTLMYDTKG 278
              + + +G
Sbjct: 376 NKALEEKQG 384

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = +3

Query: 72  EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
           E  S  +++  L    +ED +R   +       ++R+ +++  G  KG AF+EF +  DA
Sbjct: 411 EGDSKVLVVNNLSYSATEDSLREVFEKA----TSIRIPQNQ--GRAKGFAFIEFSSAEDA 464

Query: 252 KTLMYDTKGELDISGYIGKLSY 317
           K  M D+    +I G   +L +
Sbjct: 465 KDAM-DSCNNTEIEGRSIRLEF 485
>sp|O04425|FCA_ARATH Flowering time control protein FCA
          Length = 747

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = +3

Query: 90  IMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTLMYD 269
           + +  +P   +E++IR   +    N + V L+KD+RTG  +G  FV++    DA   +  
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQ-HGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 270 TKGELDISGYIGKLSYGY 323
              ++ + G  G +   Y
Sbjct: 181 LHNQITLPGGTGPVQVRY 198
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 (RNA-binding motif protein 19)
          Length = 952

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 60   QEPYEEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRR-TGSNKGIAFVEFI 236
            Q P ++ ++ I++R +P   ++ +IR  L  T      VRL K    TG+++G  FV+FI
Sbjct: 816  QVPKKQTTSKILVRNIPFQANQREIR-ELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI 874

Query: 237  AVNDAK 254
               DAK
Sbjct: 875  TKQDAK 880
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,510,430
Number of Sequences: 369166
Number of extensions: 1050722
Number of successful extensions: 2722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2717
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)