Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J15
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 56 1e-07
sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding mot... 55 2e-07
sp|P19338|NUCL_HUMAN Nucleolin (Protein C23) 53 9e-07
sp|P15771|NUCL_CHICK Nucleolin (Protein C23) 47 5e-05
sp|P09405|NUCL_MOUSE Nucleolin (Protein C23) 47 7e-05
sp|P13383|NUCL_RAT Nucleolin (Protein C23) 47 7e-05
sp|P08199|NUCL_MESAU Nucleolin (Protein C23) 47 7e-05
sp|P20397|NUCL_XENLA Nucleolin (Protein C23) 44 7e-04
sp|O04425|FCA_ARATH Flowering time control protein FCA 39 0.014
sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 (RNA-... 38 0.030
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
Length = 929
Score = 55.8 bits (133), Expect = 1e-07
Identities = 31/86 (36%), Positives = 47/86 (54%)
Frame = +3
Query: 60 QEPYEEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIA 239
+E E+ SN +M+R LP +EDDIR L VRL++++ +G ++G AFVEF
Sbjct: 121 EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 180
Query: 240 VNDAKTLMYDTKGELDISGYIGKLSY 317
+ DA M + L+I G + Y
Sbjct: 181 LQDATRWMEANQHSLNILGQKVSMHY 206
Score = 36.2 bits (82), Expect = 0.12
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +3
Query: 63 EPYEEPSN-TIMIRGLPSHISEDDIRVSLDDTQANYVA-----VRLLKDRRTGSNKGIAF 224
EP E +N TI++R L H + D I +L A Y VR++KD++T N+G AF
Sbjct: 292 EPSSENANDTIILRNLNPHSTMDSILGAL----APYAVLSSSNVRVIKDKQTQLNRGFAF 347
Query: 225 VEFIAVNDAKTL 260
++ + A+ L
Sbjct: 348 IQLSTIEAAQLL 359
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 (RNA-binding motif protein 5) (Putative tumor
suppressor LUCA15) (G15 protein)
Length = 815
Score = 55.1 bits (131), Expect = 2e-07
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 72 EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVA-VRLLKDRRTGSNKGIAFVEFIAVND 248
E S TIM+RGLP I+E DIR ++ + A VRL+K R+TG ++G AFVEF + D
Sbjct: 94 ERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQD 152
Query: 249 AKTLMYDTKGELDISG 296
A + M + +L I G
Sbjct: 153 ATSWMEANQKKLVIQG 168
Score = 39.3 bits (90), Expect = 0.014
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 84 NTIMIRGLPSHISEDDIRVSLDDTQANYVA-VRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
+TI++R + H D I +L + V +RL+KD++T N+G AFV+ + DA L
Sbjct: 231 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQL 290
Query: 261 M 263
+
Sbjct: 291 L 291
>sp|P19338|NUCL_HUMAN Nucleolin (Protein C23)
Length = 707
Score = 53.1 bits (126), Expect = 9e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +3
Query: 75 EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
+PS T+ ++GL +E+ ++ S D + V R++ DR TGS+KG FV+F + DAK
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 624
Query: 255 TLMYDTKGELD 287
M D GE+D
Sbjct: 625 EAMED--GEID 633
Score = 40.4 bits (93), Expect = 0.006
Identities = 31/121 (25%), Positives = 60/121 (49%)
Frame = +3
Query: 72 EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
E + T++ + LP +++D+++ +D +RL+ + G +KGIA++EF DA
Sbjct: 389 ERDARTLLAKNLPYKVTQDELKEVFEDA----AEIRLVS--KDGKSKGIAYIEFKTEADA 442
Query: 252 KTLMYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLS 431
+ + +G +I G L Y + D Y K ++W E + T++L +S +
Sbjct: 443 EKTFEEKQG-TEIDGRSISLYYTGEKGQNQD-YRGGKNSTWSGE--SKTLVLSNLSYSAT 498
Query: 432 E 434
E
Sbjct: 499 E 499
>sp|P15771|NUCL_CHICK Nucleolin (Protein C23)
Length = 694
Score = 47.4 bits (111), Expect = 5e-05
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 69 YEEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVND 248
+ + S T+ +RGL +E+ +R S + + ++ R++ DR TGS+KG FV+F + D
Sbjct: 548 FNQQSKTLFVRGLSEDTTEETLRESFEGS----ISARIVTDRDTGSSKGFGFVDFSSPED 603
Query: 249 AKTLMYDTK-GELD 287
AK + GE+D
Sbjct: 604 AKAAKEAMEDGEID 617
Score = 38.5 bits (88), Expect = 0.023
Identities = 28/121 (23%), Positives = 64/121 (52%)
Frame = +3
Query: 72 EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
E + T+ ++ LP ++ED+++ + N + VRL+ ++ GS+KG+A++EF +A
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFE----NALEVRLVLNKE-GSSKGMAYIEFKTEAEA 421
Query: 252 KTLMYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLS 431
+ + + +G ++ G + Y E + +++K E+ + T+++ +S S
Sbjct: 422 EKALEEKQG-TEVDGRAMVIDY----TGEKSQQESQKGGG---ERESKTLIVNNLSYAAS 473
Query: 432 E 434
E
Sbjct: 474 E 474
>sp|P09405|NUCL_MOUSE Nucleolin (Protein C23)
Length = 707
Score = 47.0 bits (110), Expect = 7e-05
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 75 EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
+PS T+ ++GL +E+ ++ S + + V R++ DR TGS+KG FV+F + DAK
Sbjct: 566 QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 621
Query: 255 TLMYDTK-GELD 287
+ GE+D
Sbjct: 622 AAKEAMEDGEID 633
Score = 38.5 bits (88), Expect = 0.023
Identities = 28/104 (26%), Positives = 55/104 (52%)
Frame = +3
Query: 81 SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
+ T++ + L +I+ED+++ +D + +RL+ + G +KGIA++EF + DA+
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFEDA----MEIRLVS--QDGKSKGIAYIEFKSEADAEKN 447
Query: 261 MYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPT 392
+ + +G +I G L Y + +R KT++W E T
Sbjct: 448 LEEKQG-AEIDGRSVSLYYTGEKGQRQER--TGKTSTWSGESKT 488
>sp|P13383|NUCL_RAT Nucleolin (Protein C23)
Length = 713
Score = 47.0 bits (110), Expect = 7e-05
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 75 EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
+PS T+ ++GL +E+ ++ S + + V R++ DR TGS+KG FV+F + DAK
Sbjct: 572 QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 627
Query: 255 TLMYDTK-GELD 287
+ GE+D
Sbjct: 628 AAKEAMEDGEID 639
Score = 37.7 bits (86), Expect = 0.040
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = +3
Query: 81 SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
+ T++ + L +I+ED+++ +D V +RL+ + G +KGIA++EF + DA+
Sbjct: 396 ARTLLAKNLSFNITEDELKEVFEDA----VEIRLVS--QDGRSKGIAYIEFKSEADAEKN 449
Query: 261 MYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLSE 434
+ + +G +I G L Y + +R K ++W E + T++L +S +E
Sbjct: 450 LEEKQG-AEIDGRSVSLYYTGEKGQRQER--TGKNSTWSGE--SKTLVLSNLSYSATE 502
>sp|P08199|NUCL_MESAU Nucleolin (Protein C23)
Length = 714
Score = 47.0 bits (110), Expect = 7e-05
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 75 EPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAK 254
+PS T+ ++GL +E+ ++ S + + V R++ DR TGS+KG FV+F + DAK
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAK 624
Query: 255 TLMYDTK-GELD 287
+ GE+D
Sbjct: 625 AAKEAMEDGEID 636
Score = 37.0 bits (84), Expect = 0.068
Identities = 30/118 (25%), Positives = 62/118 (52%)
Frame = +3
Query: 81 SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
+ T++ + L +I+ED+++ +D + +RL+ + G +KGIA++EF + DA+
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFEDA----LEIRLVS--QDGKSKGIAYIEFKSEADAEKN 446
Query: 261 MYDTKGELDISGYIGKLSYGYNVKEEVDRYDAEKTNSWRYEKPTNTVMLRGVSNMLSE 434
+ + +G +I G L Y + +R K ++W E + T++L +S +E
Sbjct: 447 LEEKQG-AEIDGRSVSLYYTGEKGQRQER--TGKNSTWSGE--SKTLVLSNLSYSATE 499
>sp|P20397|NUCL_XENLA Nucleolin (Protein C23)
Length = 651
Score = 43.5 bits (101), Expect = 7e-04
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 81 SNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTL 260
S T+ +RGL +E+ ++ + D + V R++ DR TG++KG FV+F DAK
Sbjct: 502 SKTLFVRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDFSTAEDAKAA 557
Query: 261 MYDTK-GELD 287
+ GE+D
Sbjct: 558 KEAMEDGEID 567
Score = 32.7 bits (73), Expect = 1.3
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +3
Query: 72 EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
E S T+ ++ +P + ++++ ++ A + + KD GSNKGIA+VEF ++A
Sbjct: 321 ERDSRTLFVKNIPYSTTVEELQEIFEN--AKDIRIPTGKD---GSNKGIAYVEFSNEDEA 375
Query: 252 KTLMYDTKG 278
+ + +G
Sbjct: 376 NKALEEKQG 384
Score = 31.2 bits (69), Expect = 3.7
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +3
Query: 72 EEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDA 251
E S +++ L +ED +R + ++R+ +++ G KG AF+EF + DA
Sbjct: 411 EGDSKVLVVNNLSYSATEDSLREVFEKA----TSIRIPQNQ--GRAKGFAFIEFSSAEDA 464
Query: 252 KTLMYDTKGELDISGYIGKLSY 317
K M D+ +I G +L +
Sbjct: 465 KDAM-DSCNNTEIEGRSIRLEF 485
>sp|O04425|FCA_ARATH Flowering time control protein FCA
Length = 747
Score = 39.3 bits (90), Expect = 0.014
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +3
Query: 90 IMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRRTGSNKGIAFVEFIAVNDAKTLMYD 269
+ + +P +E++IR + N + V L+KD+RTG +G FV++ DA +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQ-HGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 270 TKGELDISGYIGKLSYGY 323
++ + G G + Y
Sbjct: 181 LHNQITLPGGTGPVQVRY 198
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 (RNA-binding motif protein 19)
Length = 952
Score = 38.1 bits (87), Expect = 0.030
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 QEPYEEPSNTIMIRGLPSHISEDDIRVSLDDTQANYVAVRLLKDRR-TGSNKGIAFVEFI 236
Q P ++ ++ I++R +P ++ +IR L T VRL K TG+++G FV+FI
Sbjct: 816 QVPKKQTTSKILVRNIPFQANQREIR-ELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI 874
Query: 237 AVNDAK 254
DAK
Sbjct: 875 TKQDAK 880
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,510,430
Number of Sequences: 369166
Number of extensions: 1050722
Number of successful extensions: 2722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2717
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)