Planaria EST Database


DrC_02530

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02530
         (868 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89AA9|Y411_BUCBP  Hypothetical transport protein bbp411        35   0.35 
sp|Q01223|VB19_VACCV  Ankyrin repeat protein B19/B20               30   8.7  
sp|Q8WHW9|YCF2_PSINU  Protein ycf2                                 30   8.7  
>sp|Q89AA9|Y411_BUCBP Hypothetical transport protein bbp411
          Length = 394

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 15/67 (22%), Positives = 37/67 (55%)
 Frame = +3

Query: 129 YYQSICNIIKVFVILSKYL*YYQSICNIIKVFVILSKYL*YYQSICNLIEVFVMLSKYLL 308
           +++ + N +   + LS +L ++  +CN I + V L K   +++ +  +I + ++L  +L+
Sbjct: 206 FFKILSNRVLCQINLSVFLIHFFLMCNFIIIPVELKKIFEFFEYVPEIIYIVILLVSFLI 265

Query: 309 RYLCPCY 329
              C C+
Sbjct: 266 VLFCICF 272

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = +3

Query: 9   YYRSICNIIEVFVILSKYL*YYRSICNIIEVFVILSKYL*YYQSICNIIKVFVILSKYL* 188
           +++ + N +   + LS +L ++  +CN I + V L K   +++ +  II + ++L  +L 
Sbjct: 206 FFKILSNRVLCQINLSVFLIHFFLMCNFIIIPVELKKIFEFFEYVPEIIYIVILLVSFLI 265

Query: 189 YYQSICNI 212
               IC I
Sbjct: 266 VLFCICFI 273

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +3

Query: 69  YYRSICNIIEVFVILSKYL*YYQSICNIIKVFVILSKYL*YYQSICNIIKVFVILSKYL* 248
           +++ + N +   + LS +L ++  +CN I + V L K   +++ +  II + ++L  +L 
Sbjct: 206 FFKILSNRVLCQINLSVFLIHFFLMCNFIIIPVELKKIFEFFEYVPEIIYIVILLVSFLI 265

Query: 249 YYQSIC 266
               IC
Sbjct: 266 VLFCIC 271
>sp|Q01223|VB19_VACCV Ankyrin repeat protein B19/B20
          Length = 309

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 268 ILSKYLSCYRSICYDTFVLVILMNRNPPNQYFQLSIAKY 384
           I+  YL  Y++  Y  F  ++L N++  N Y+ +S +KY
Sbjct: 73  IVHSYLKNYKNFDYPFFRKLVLTNKHCLNNYYNISDSKY 111
>sp|Q8WHW9|YCF2_PSINU Protein ycf2
          Length = 2313

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 267 NLIEVF--VMLSKYLLRYLCPCYFNESKSSKSIFPIKYCKISMINL 398
           NLI++F   +LS ++LR L     + S+S K IFP+KY  I  I L
Sbjct: 48  NLIKLFDFQILSSFILRNL-----HSSRSQKKIFPLKYLFIITIPL 88
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,317,129
Number of Sequences: 369166
Number of extensions: 1625627
Number of successful extensions: 3109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3086
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)