Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J12
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q89AA9|Y411_BUCBP Hypothetical transport protein bbp411 35 0.35
sp|Q01223|VB19_VACCV Ankyrin repeat protein B19/B20 30 8.7
sp|Q8WHW9|YCF2_PSINU Protein ycf2 30 8.7
>sp|Q89AA9|Y411_BUCBP Hypothetical transport protein bbp411
Length = 394
Score = 34.7 bits (78), Expect = 0.35
Identities = 15/67 (22%), Positives = 37/67 (55%)
Frame = +3
Query: 129 YYQSICNIIKVFVILSKYL*YYQSICNIIKVFVILSKYL*YYQSICNLIEVFVMLSKYLL 308
+++ + N + + LS +L ++ +CN I + V L K +++ + +I + ++L +L+
Sbjct: 206 FFKILSNRVLCQINLSVFLIHFFLMCNFIIIPVELKKIFEFFEYVPEIIYIVILLVSFLI 265
Query: 309 RYLCPCY 329
C C+
Sbjct: 266 VLFCICF 272
Score = 30.8 bits (68), Expect = 5.1
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +3
Query: 9 YYRSICNIIEVFVILSKYL*YYRSICNIIEVFVILSKYL*YYQSICNIIKVFVILSKYL* 188
+++ + N + + LS +L ++ +CN I + V L K +++ + II + ++L +L
Sbjct: 206 FFKILSNRVLCQINLSVFLIHFFLMCNFIIIPVELKKIFEFFEYVPEIIYIVILLVSFLI 265
Query: 189 YYQSICNI 212
IC I
Sbjct: 266 VLFCICFI 273
Score = 30.4 bits (67), Expect = 6.6
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 69 YYRSICNIIEVFVILSKYL*YYQSICNIIKVFVILSKYL*YYQSICNIIKVFVILSKYL* 248
+++ + N + + LS +L ++ +CN I + V L K +++ + II + ++L +L
Sbjct: 206 FFKILSNRVLCQINLSVFLIHFFLMCNFIIIPVELKKIFEFFEYVPEIIYIVILLVSFLI 265
Query: 249 YYQSIC 266
IC
Sbjct: 266 VLFCIC 271
>sp|Q01223|VB19_VACCV Ankyrin repeat protein B19/B20
Length = 309
Score = 30.0 bits (66), Expect = 8.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 268 ILSKYLSCYRSICYDTFVLVILMNRNPPNQYFQLSIAKY 384
I+ YL Y++ Y F ++L N++ N Y+ +S +KY
Sbjct: 73 IVHSYLKNYKNFDYPFFRKLVLTNKHCLNNYYNISDSKY 111
>sp|Q8WHW9|YCF2_PSINU Protein ycf2
Length = 2313
Score = 30.0 bits (66), Expect = 8.7
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 267 NLIEVF--VMLSKYLLRYLCPCYFNESKSSKSIFPIKYCKISMINL 398
NLI++F +LS ++LR L + S+S K IFP+KY I I L
Sbjct: 48 NLIKLFDFQILSSFILRNL-----HSSRSQKKIFPLKYLFIITIPL 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,317,129
Number of Sequences: 369166
Number of extensions: 1625627
Number of successful extensions: 3109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3086
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)