Planaria EST Database


DrC_02527

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02527
         (598 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35247|SFTPD_HUMAN  Pulmonary surfactant-associated prote...    30   3.5  
sp|P38506|EX9_ECOLI  Exodeoxyribonuclease IX (Exonuclease IX...    30   4.6  
sp|P97769|CITE1_MOUSE  Cbp/p300-interacting transactivator 1...    29   7.9  
sp|Q8TUY7|PFDA_METKA  Prefoldin alpha subunit (GimC alpha su...    29   7.9  
>sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
          Length = 375

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 216 ESMPSNSGKKEETHAEDRKVLMAEVKRLQGQIQSLWATNIKQRKKID 356
           + +P + G K E+   D   L  +V+ LQGQ+Q L A    Q KK++
Sbjct: 207 KGIPGDKGAKGESGLPDVASLRQQVEALQGQVQHLQAA-FSQYKKVE 252
>sp|P38506|EX9_ECOLI Exodeoxyribonuclease IX (Exonuclease IX) (Exo IX)
          Length = 281

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
 Frame = +3

Query: 276 LMAEVKRLQGQIQSLWATNIKQRKKIDTHR-----TRELALLQTN 395
           L+ E + L+G  ++L A   K RKK++TH+      R++A LQT+
Sbjct: 223 LLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTD 267
>sp|P97769|CITE1_MOUSE Cbp/p300-interacting transactivator 1 (Melanocyte-specific protein
           1)
          Length = 203

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 313 KACGLPTSSNGRRSILTGPVSSPCYRPTK----RCSILLSRTQTKRLFSWPTGALST 471
           KA G+PTSS+G  S +  P ++P  +P          L++  Q ++L S   GA +T
Sbjct: 56  KANGVPTSSSGSTSPIGSPTATPSSKPPSFNLHPTPHLMASMQLQKLNSQYQGAAAT 112
>sp|Q8TUY7|PFDA_METKA Prefoldin alpha subunit (GimC alpha subunit)
          Length = 157

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/79 (25%), Positives = 42/79 (53%)
 Frame = +3

Query: 240 KKEETHAEDRKVLMAEVKRLQGQIQSLWATNIKQRKKIDTHRTRELALLQTNQTLFDIIK 419
           K E+   ++ + L+AE+ RLQGQ++++ A       +ID   +    L +  +TL  + +
Sbjct: 5   KNEQEIQQELQRLIAEINRLQGQMEAINA-------QIDLIESSISELNRVEETLKGVKE 57

Query: 420 SYADQETVLMANWRTFHQA 476
              D+E ++    ++F +A
Sbjct: 58  LEGDEEVLVPVGAQSFVRA 76
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,303,726
Number of Sequences: 369166
Number of extensions: 1547802
Number of successful extensions: 3480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3480
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)