Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J02
(598 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated prote... 30 3.5
sp|P38506|EX9_ECOLI Exodeoxyribonuclease IX (Exonuclease IX... 30 4.6
sp|P97769|CITE1_MOUSE Cbp/p300-interacting transactivator 1... 29 7.9
sp|Q8TUY7|PFDA_METKA Prefoldin alpha subunit (GimC alpha su... 29 7.9
>sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
Length = 375
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 216 ESMPSNSGKKEETHAEDRKVLMAEVKRLQGQIQSLWATNIKQRKKID 356
+ +P + G K E+ D L +V+ LQGQ+Q L A Q KK++
Sbjct: 207 KGIPGDKGAKGESGLPDVASLRQQVEALQGQVQHLQAA-FSQYKKVE 252
>sp|P38506|EX9_ECOLI Exodeoxyribonuclease IX (Exonuclease IX) (Exo IX)
Length = 281
Score = 30.0 bits (66), Expect = 4.6
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Frame = +3
Query: 276 LMAEVKRLQGQIQSLWATNIKQRKKIDTHR-----TRELALLQTN 395
L+ E + L+G ++L A K RKK++TH+ R++A LQT+
Sbjct: 223 LLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTD 267
>sp|P97769|CITE1_MOUSE Cbp/p300-interacting transactivator 1 (Melanocyte-specific protein
1)
Length = 203
Score = 29.3 bits (64), Expect = 7.9
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 313 KACGLPTSSNGRRSILTGPVSSPCYRPTK----RCSILLSRTQTKRLFSWPTGALST 471
KA G+PTSS+G S + P ++P +P L++ Q ++L S GA +T
Sbjct: 56 KANGVPTSSSGSTSPIGSPTATPSSKPPSFNLHPTPHLMASMQLQKLNSQYQGAAAT 112
>sp|Q8TUY7|PFDA_METKA Prefoldin alpha subunit (GimC alpha subunit)
Length = 157
Score = 29.3 bits (64), Expect = 7.9
Identities = 20/79 (25%), Positives = 42/79 (53%)
Frame = +3
Query: 240 KKEETHAEDRKVLMAEVKRLQGQIQSLWATNIKQRKKIDTHRTRELALLQTNQTLFDIIK 419
K E+ ++ + L+AE+ RLQGQ++++ A +ID + L + +TL + +
Sbjct: 5 KNEQEIQQELQRLIAEINRLQGQMEAINA-------QIDLIESSISELNRVEETLKGVKE 57
Query: 420 SYADQETVLMANWRTFHQA 476
D+E ++ ++F +A
Sbjct: 58 LEGDEEVLVPVGAQSFVRA 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,303,726
Number of Sequences: 369166
Number of extensions: 1547802
Number of successful extensions: 3480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3480
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)