Planaria EST Database


DrC_02526

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02526
         (846 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96DB2|HDA11_HUMAN  Histone deacetylase 11 (HD11)              271   2e-72
sp|Q9GKU5|HDA11_MACFA  Histone deacetylase 11 (HD11)              271   2e-72
sp|Q91WA3|HDA11_MOUSE  Histone deacetylase 11 (HD11)              266   5e-71
sp|P28606|YGLA_SYNP2  Hypothetical 34.1 kDa protein in glnA ...   128   2e-29
sp|Q56195|ACUC_STAXY  Acetoin utilization protein acuC             88   3e-17
sp|Q8NW34|ACUC_STAAW  Acetoin utilization protein acuC             86   1e-16
sp|O30107|Y130_ARCFU  Hypothetical protein AF0130                  85   2e-16
sp|P39067|ACUC_BACSU  Acetoin utilization protein acuC             85   3e-16
sp|P64376|ACUC_STAAN  Acetoin utilization protein acuC >gi|5...    83   1e-15
sp|Q92769|HDAC2_HUMAN  Histone deacetylase 2 (HD2)                 81   4e-15
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 (HD11)
          Length = 347

 Score =  271 bits (693), Expect = 2e-72
 Identities = 140/266 (52%), Positives = 181/266 (68%), Gaps = 1/266 (0%)
 Frame = +2

Query: 50  ITKNNITEAVEARDEELRIGHSSEYLNSLKKSLNVAKIVEVGLVAMIPNRFVQSRLLSKF 229
           ++ + + EA EA +E+L + H+  YLN LK S  VA I E+  V  +PN  VQ ++L   
Sbjct: 55  LSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPL 114

Query: 230 RYQVGGTIQAAKLALKRSWAINIGGGFHHASEDAGGGFCVYADISIAIKSI-QQENPDYK 406
           R Q GGTI A KLA++R WAIN+GGGFHH S D GGGFC YADI++AIK + ++     +
Sbjct: 115 RTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISR 174

Query: 407 FMIIDLDAHQGNGHERDFTNDKNVFILDIYNEGIYPHDEEAKRGIDISVGLMSYTKDKEY 586
             IIDLDAHQGNGHERDF +DK V+I+D+YN  IYP D  AK+ I   V L   T+D EY
Sbjct: 175 ATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEY 234

Query: 587 LEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKGIVDRDEIVFKKAKERKC 766
           L+K+  N+ K+  +  P ++VYNAGTD L GD LG LSIS  GIV RDE+VF+  + R+ 
Sbjct: 235 LDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRV 294

Query: 767 PIVMLTSGGYQHTNAAIIANSIWESF 844
           PI+M+TSGGYQ   A IIA+SI   F
Sbjct: 295 PILMVTSGGYQKRTARIIADSILNLF 320
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 (HD11)
          Length = 347

 Score =  271 bits (693), Expect = 2e-72
 Identities = 140/266 (52%), Positives = 181/266 (68%), Gaps = 1/266 (0%)
 Frame = +2

Query: 50  ITKNNITEAVEARDEELRIGHSSEYLNSLKKSLNVAKIVEVGLVAMIPNRFVQSRLLSKF 229
           ++ + + EA EA +E+L + H+  YLN LK S  VA I E+  V  +PN  VQ ++L   
Sbjct: 55  LSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPL 114

Query: 230 RYQVGGTIQAAKLALKRSWAINIGGGFHHASEDAGGGFCVYADISIAIKSI-QQENPDYK 406
           R Q GGTI A KLA++R WAIN+GGGFHH S D GGGFC YADI++AIK + ++     +
Sbjct: 115 RTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISR 174

Query: 407 FMIIDLDAHQGNGHERDFTNDKNVFILDIYNEGIYPHDEEAKRGIDISVGLMSYTKDKEY 586
             IIDLDAHQGNGHERDF +DK V+I+D+YN  IYP D  AK+ I   V L   T+D EY
Sbjct: 175 ATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEY 234

Query: 587 LEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKGIVDRDEIVFKKAKERKC 766
           L+K+  N++K+  +  P ++VYNAGTD L GD LG LSIS  GIV RDE+VF+  + R  
Sbjct: 235 LDKVERNIEKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRHV 294

Query: 767 PIVMLTSGGYQHTNAAIIANSIWESF 844
           PI+M+TSGGYQ   A IIA+SI   F
Sbjct: 295 PILMVTSGGYQKRTARIIADSILNLF 320
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 (HD11)
          Length = 347

 Score =  266 bits (680), Expect = 5e-71
 Identities = 138/257 (53%), Positives = 174/257 (67%), Gaps = 1/257 (0%)
 Frame = +2

Query: 65  ITEAVEARDEELRIGHSSEYLNSLKKSLNVAKIVEVGLVAMIPNRFVQSRLLSKFRYQVG 244
           + EA EA +E+L + H+  YLN LK S  VA I E+  V  +PN  VQ ++L   R Q G
Sbjct: 60  LVEAREASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTG 119

Query: 245 GTIQAAKLALKRSWAINIGGGFHHASEDAGGGFCVYADISIAIKSI-QQENPDYKFMIID 421
           GTI A KLA++R WAIN+GGGFHH S D GGGFC YADI++AIK + ++     +  IID
Sbjct: 120 GTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIID 179

Query: 422 LDAHQGNGHERDFTNDKNVFILDIYNEGIYPHDEEAKRGIDISVGLMSYTKDKEYLEKLN 601
           LDAHQGNGHERDF  DK V+I+D+YN  IYP D  AK  I   V L   T+D+EYLEK+ 
Sbjct: 180 LDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKEAIRRKVELEWGTEDEEYLEKVE 239

Query: 602 ENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKGIVDRDEIVFKKAKERKCPIVML 781
            N+ ++  +  P ++VYNAGTD L GD LG LSIS  GIV RDE+VF+  +    PI+M+
Sbjct: 240 RNVRRSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVKRDEVVFRVVRAHDIPILMV 299

Query: 782 TSGGYQHTNAAIIANSI 832
           TSGGYQ   A IIA+SI
Sbjct: 300 TSGGYQKRTARIIADSI 316
>sp|P28606|YGLA_SYNP2 Hypothetical 34.1 kDa protein in glnA 3'region
          Length = 310

 Score =  128 bits (321), Expect = 2e-29
 Identities = 68/186 (36%), Positives = 102/186 (54%)
 Frame = +2

Query: 239 VGGTIQAAKLALKRSWAINIGGGFHHASEDAGGGFCVYADISIAIKSIQQENPDYKFMII 418
           VGGTI  A+LAL+   A N  GG HHA    G GFC+  D++IA ++IQQ     + +I+
Sbjct: 106 VGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIV 165

Query: 419 DLDAHQGNGHERDFTNDKNVFILDIYNEGIYPHDEEAKRGIDISVGLMSYTKDKEYLEKL 598
           DLD HQG+G    F +D  VF   ++ E  +P     K+  D+ +GL     D  YL+ L
Sbjct: 166 DLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFP---SQKQRSDLDLGLPEGLDDDGYLQIL 222

Query: 599 NENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKGIVDRDEIVFKKAKERKCPIVM 778
             +L+    Q +P L+ Y+AG D  +GD LG+L+++  G+  R+ +V         P+  
Sbjct: 223 AHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTGLYRRERLVLSTCLAAGYPVAC 282

Query: 779 LTSGGY 796
           +  GGY
Sbjct: 283 VIGGGY 288
>sp|Q56195|ACUC_STAXY Acetoin utilization protein acuC
          Length = 385

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 14/252 (5%)
 Frame = +2

Query: 83  ARDEELRIGHSSEYLNSLKK-SLNVAKIVEVGLVAMIPNRFVQSRLLSKFRYQ-VGGTIQ 256
           A D+EL + H+ +Y+ +++  S  +    E     +     +Q R++ K   + VGG + 
Sbjct: 56  ATDDELSLIHAYDYIQAIRHASHGILSENEAKKYGLDGEDTLQFRMMHKHSARIVGGALN 115

Query: 257 AAKLALKRSWA--INIGGGFHHASEDAGGGFCVYADISIAIKSIQQENPDYKFMIIDLDA 430
            A   +  +     ++GGG HH+      GFC+Y D++I I  + Q+  + + + ID DA
Sbjct: 116 LADQIMSGTLTNGCHLGGGLHHSLPGRANGFCIYNDVAITISYLMQKY-NQRVLCIDTDA 174

Query: 431 HQGNGHERDFTNDKNVFILDIYNEG--IYP-------HDEEAKRGIDISVGLMSYTKDKE 583
           H G+G +  F  +    I  I+  G  ++P          E   G  +++ L  YT+D+ 
Sbjct: 175 HHGDGTQWSFYTNDQALIYSIHETGKFLFPGSGHYTERGAEKGFGYTVNIPLEPYTEDQS 234

Query: 584 YLEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKGIVDRDEIVFKKAKE-R 760
           +L+   + ++     F+P +IV   G D    DPL  +S +   + +   IV   A    
Sbjct: 235 FLDVFKQTIEPVVASFKPDIIVSVHGVDVHYLDPLTHMSCTLNTLYEIPYIVKSLADTYT 294

Query: 761 KCPIVMLTSGGY 796
           +  ++M   GGY
Sbjct: 295 QGKVIMFGGGGY 306
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein acuC
          Length = 389

 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 73/277 (26%), Positives = 126/277 (45%), Gaps = 22/277 (7%)
 Frame = +2

Query: 32  SENLIN---ITKNNITEAVEARDEELRIGHSSEYLNSLKKS----LNVAKIVEVGLVAMI 190
           +E L+N   ++   I +   A D+EL + H  +Y+ ++K +    ++  +  + GL    
Sbjct: 36  TELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASHGIISEDEAKKYGL---- 91

Query: 191 PNRFVQSRLLSKFRYQ---VGGTIQAAKLAL--KRSWAINIGGGFHHASEDAGGGFCVYA 355
            N    S+     R+    VGG +  A L +  K     ++GGG HHA      GFC+Y 
Sbjct: 92  -NDEENSQFKHMHRHSATIVGGALTLADLIMSGKVLNGCHLGGGLHHAQPGRASGFCIYN 150

Query: 356 DISIAIKSIQQENPDYKFMIIDLDAHQGNGHERDFTNDKNVFILDIYNEG--IYP----- 514
           DI+I  + + +E  + + +IID DAH G+G +  F  D +V    I+  G  ++P     
Sbjct: 151 DIAITAQYLAKEY-NQRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHY 209

Query: 515 --HDEEAKRGIDISVGLMSYTKDKEYLEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPL 688
               E+   G  ++V L  YT+D  +LE     ++     F+P +I+   G D    DPL
Sbjct: 210 TERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPL 269

Query: 689 GRLSISEKGIVDRDEIV-FKKAKERKCPIVMLTSGGY 796
             L+ +   + +    V +         ++M   GGY
Sbjct: 270 THLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGY 306
>sp|O30107|Y130_ARCFU Hypothetical protein AF0130
          Length = 359

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 19/272 (6%)
 Frame = +2

Query: 65  ITEAVEARDEELRIGHSSEYLNSLKKSLNVAKIVEVGLVAMIPNRFVQSRLLSKFRYQVG 244
           + E  +A  E++   H+ EY+  L+       I++      IP       LL+      G
Sbjct: 47  LLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFD--TNIPVGVFDRALLA-----AG 99

Query: 245 GTIQAAKLALKR----SWAINIGGGFHHASEDAGGGFCVYADISIAIKSIQQENPDYKFM 412
           G I+AA+  L +    ++A+    G HHA    G GFC   +++I +K + ++  + +  
Sbjct: 100 GAIRAAQAVLNKECENAFAMIRPPG-HHAKPYIGAGFCYLNNMAIMVKWLLKQGFE-RIA 157

Query: 413 IIDLDAHQGNGHERDFTNDKNVFILDIYNEGIYP---HDEEAK----RGIDISVGLMSYT 571
           I+D DAH G+G +  F ND  V  +  +   +YP   + EE       G  +++ L   T
Sbjct: 158 ILDWDAHHGDGTQEIFYNDDRVLFISTHQMPLYPGTGYPEECGTGKGEGYTVNIPLPPGT 217

Query: 572 KDKEYLEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKGIVDRDEIVFKKA 751
            D+ Y+  ++E ++   ++F+PQ I  +AG D    DP+  L+++ +G  +        A
Sbjct: 218 GDEGYMMVIDEIIEPVVNEFKPQFIAISAGQDNHFTDPITSLALTARGYAEMMRRAVAMA 277

Query: 752 KERKCP--IVMLTSGGYQ------HTNAAIIA 823
            E+ C   +V +  GGY       +TN  IIA
Sbjct: 278 -EKHCDGRLVAVLEGGYSVEGALPYTNLGIIA 308
>sp|P39067|ACUC_BACSU Acetoin utilization protein acuC
          Length = 387

 Score = 84.7 bits (208), Expect = 3e-16
 Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 15/221 (6%)
 Frame = +2

Query: 83  ARDEELRIGHSSEYLNSLKKS----LNVAKIVEVGLVAMIPNRFVQSRLLSKFRYQVGGT 250
           A +EEL + H+ +Y+ ++K +    L   +    GL       F      +     VGGT
Sbjct: 52  ASEEELSLVHTDDYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLL--VGGT 109

Query: 251 IQAAKLALKRS--WAINIGGGFHHASEDAGGGFCVYADISIAIKSIQQENPDYKFMIIDL 424
           + AA   +      A N+GGG HH       GFC+Y D ++AI+ IQ++    + + ID 
Sbjct: 110 LTAADWVMSGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQYIQKKY-SARVLYIDT 168

Query: 425 DAHQGNGHERDFTNDKNVFILDIYNEG--IYPHDEEAKR-------GIDISVGLMSYTKD 577
           DAH G+G +  F ++ +V  L I+  G  ++P   + +        G   ++ L ++T+D
Sbjct: 169 DAHHGDGVQFTFYDNPDVCTLSIHETGRYLFPGTGQIQEKGSGKGYGYSFNIPLDAFTED 228

Query: 578 KEYLEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLS 700
             +LE       +    FEP +I+   G D    DPL  LS
Sbjct: 229 DSFLEAYRTAASEVAAYFEPDVIISQNGADAHYYDPLTHLS 269
>sp|P64376|ACUC_STAAN Acetoin utilization protein acuC
 sp|P64375|ACUC_STAAM Acetoin utilization protein acuC
          Length = 389

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 12/198 (6%)
 Frame = +2

Query: 239 VGGTIQAAKLAL--KRSWAINIGGGFHHASEDAGGGFCVYADISIAIKSIQQENPDYKFM 412
           VGG +  A L +  K     ++GGG HHA      GFC+Y DI+I  + I +E  + + +
Sbjct: 110 VGGALTLADLIMSGKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEY-NQRVL 168

Query: 413 IIDLDAHQGNGHERDFTNDKNVFILDIYNEG--IYP-------HDEEAKRGIDISVGLMS 565
           IID DAH G+G +  F  D +V    I+  G  ++P         E+   G  ++V L  
Sbjct: 169 IIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEP 228

Query: 566 YTKDKEYLEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKGIVDRDEIV-F 742
           YT+D  +LE     ++     F+P +I+   G D    DPL  L+ +   + +    V +
Sbjct: 229 YTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKY 288

Query: 743 KKAKERKCPIVMLTSGGY 796
                    ++M   GGY
Sbjct: 289 LADSYTNGKVIMFGGGGY 306
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 (HD2)
          Length = 488

 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 76/273 (27%), Positives = 115/273 (42%), Gaps = 20/273 (7%)
 Frame = +2

Query: 56  KNNITEAVEARDEELRIGHSSEYLNSLKKSLNVAKIVEVGLVAMIPNRF-------VQSR 214
           K  I    +A  EE+   HS EY+  L+ S+    + E         RF       V   
Sbjct: 51  KMEIYRPHKATAEEMTKYHSDEYIKFLR-SIRPDNMSEYSKQMQ---RFNVGEDCPVFDG 106

Query: 215 LLSKFRYQVGGTIQAA-KLALKRS-WAINIGGGFHHASEDAGGGFCVYADISIAIKSIQQ 388
           L    +   GG++  A KL  +++  A+N  GG HHA +    GFC   DI +AI  + +
Sbjct: 107 LFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK 166

Query: 389 ENPDYKFMIIDLDAHQGNGHERDFTNDKNVFILDIYNEGIY-PHDEEAKRGIDISVGLMS 565
            +   + + ID+D H G+G E  F     V  +  +  G Y P   + +   DI  G   
Sbjct: 167 YH--QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLR---DIGAGKGK 221

Query: 566 Y----------TKDKEYLEKLNENLDKAFDQFEPQLIVYNAGTDCLLGDPLGRLSISEKG 715
           Y            D+ Y +     + K  + ++P  +V   G D L GD LG  +++ KG
Sbjct: 222 YYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKG 281

Query: 716 IVDRDEIVFKKAKERKCPIVMLTSGGYQHTNAA 814
                E+V    K    P++ML  GGY   N A
Sbjct: 282 HAKCVEVV----KTFNLPLLMLGGGGYTIRNVA 310
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,224,890
Number of Sequences: 369166
Number of extensions: 1792664
Number of successful extensions: 5216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5106
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)