Planaria EST Database


DrC_02525

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02525
         (810 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WUK5|INHBC_RAT  Inhibin beta C chain precursor (Activin...    52   2e-06
sp|P55102|IHBA_HORSE  Inhibin beta A chain precursor (Activi...    51   4e-06
sp|P07995|INHBA_BOVIN  Inhibin beta A chain precursor (Activ...    50   7e-06
sp|P18331|INHBA_RAT  Inhibin beta A chain precursor (Activin...    50   7e-06
sp|P08476|INHBA_HUMAN  Inhibin beta A chain precursor (Activ...    50   7e-06
sp|Q04998|INHBA_MOUSE  Inhibin beta A chain precursor (Activ...    50   7e-06
sp|P03970|INHBA_PIG  Inhibin beta A chain precursor (Activin...    50   7e-06
sp|P43032|INHBA_SHEEP  Inhibin beta A chain precursor (Activ...    50   7e-06
sp|P55104|INHBC_MOUSE  Inhibin beta C chain precursor (Activ...    50   1e-05
sp|P58166|INHBE_HUMAN  Inhibin beta E chain precursor (Activ...    48   3e-05
>sp|Q9WUK5|INHBC_RAT Inhibin beta C chain precursor (Activin beta-C chain)
          Length = 351

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTP---- 631
           R  +RG   NC   +  CC Q F V   ++G  + ++ P+   +N+C G+C         
Sbjct: 231 RVRRRGI--NCQGLSRMCCRQEFFVDFREIGWHDWIIQPEGYAMNFCTGQCPLHVAGMPG 288

Query: 632 -QRSNHAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
              S H   + LLK + ++  + R      SCC P S   L + Y +  +NI+KT + DM
Sbjct: 289 ISASFHTAVLNLLKANTDAGTARR-----GSCCVPTSRRPLSLLYYDRDSNIVKTDIPDM 343
>sp|P55102|IHBA_HORSE Inhibin beta A chain precursor (Activin beta-A chain)
          Length = 426

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
           R  +RG    C      CC + F V+  D+G  + +++P   H NYC GEC +     S 
Sbjct: 306 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 363

Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            +   +    ++           +KSCC P     + + Y +   NI+K  + +M
Sbjct: 364 SSLSFHSTVINQYRLRGHNPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 418
>sp|P07995|INHBA_BOVIN Inhibin beta A chain precursor (Activin beta-A chain)
          Length = 425

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
           R  +RG    C      CC + F V+  D+G  + +++P   H NYC GEC +     S 
Sbjct: 305 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 362

Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            +   +    +            +KSCC P     + + Y +   NI+K  + +M
Sbjct: 363 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 417
>sp|P18331|INHBA_RAT Inhibin beta A chain precursor (Activin beta-A chain)
          Length = 424

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
           R  +RG    C      CC + F V+  D+G  + +++P   H NYC GEC +     S 
Sbjct: 304 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 361

Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            +   +    +            +KSCC P     + + Y +   NI+K  + +M
Sbjct: 362 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 416
>sp|P08476|INHBA_HUMAN Inhibin beta A chain precursor (Activin beta-A chain) (Erythroid
           differentiation protein) (EDF)
          Length = 426

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
           R  +RG    C      CC + F V+  D+G  + +++P   H NYC GEC +     S 
Sbjct: 306 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 363

Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            +   +    +            +KSCC P     + + Y +   NI+K  + +M
Sbjct: 364 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 418
>sp|Q04998|INHBA_MOUSE Inhibin beta A chain precursor (Activin beta-A chain)
          Length = 424

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
           R  +RG    C      CC + F V+  D+G  + +++P   H NYC GEC +     S 
Sbjct: 304 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 361

Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            +   +    +            +KSCC P     + + Y +   NI+K  + +M
Sbjct: 362 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 416
>sp|P03970|INHBA_PIG Inhibin beta A chain precursor (Activin beta-A chain)
          Length = 424

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
           R  +RG    C      CC + F V+  D+G  + +++P   H NYC GEC +     S 
Sbjct: 304 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 361

Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            +   +    +            +KSCC P     + + Y +   NI+K  + +M
Sbjct: 362 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 416
>sp|P43032|INHBA_SHEEP Inhibin beta A chain precursor (Activin beta-A chain)
          Length = 425

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
           R  +RG    C      CC + F V+  D+G  + +++P   H NYC GEC +     S 
Sbjct: 305 RRRRRGL--ECDGKVNICCKKQFYVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 362

Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            +   +    +            +KSCC P     + + Y +   NI+K  + +M
Sbjct: 363 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 417
>sp|P55104|INHBC_MOUSE Inhibin beta C chain precursor (Activin beta-C chain)
          Length = 352

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
 Frame = +2

Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTP---- 631
           R  +RG   +C   +  CC Q F V   ++G  + ++ P+   +N+C G+C         
Sbjct: 232 RVRRRGI--DCQGASRMCCRQEFFVDFREIGWNDWIIQPEGYAMNFCTGQCPLHVAGMPG 289

Query: 632 -QRSNHAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
              S H   + LLK +  +  + R      SCC P S   L + Y +  +NI+KT + DM
Sbjct: 290 ISASFHTAVLNLLKANAAAGTTGR-----GSCCVPTSRRPLSLLYYDRDSNIVKTDIPDM 344
>sp|P58166|INHBE_HUMAN Inhibin beta E chain precursor (Activin beta-E chain)
          Length = 350

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
 Frame = +2

Query: 473 AQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTP-----Q 634
           A+R  P  C   T  CC +   V   +LG ++ ++ P+   LNYC G+C           
Sbjct: 233 ARRRTP-TCEPATPLCCRRDHYVDFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIA 291

Query: 635 RSNHAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
            S H+    LLK +     S        SCC P +   L + Y +++ N++KT V DM
Sbjct: 292 ASFHSAVFSLLKANNPWPAST-------SCCVPTARRPLSLLYLDHNGNVVKTDVPDM 342
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,399,034
Number of Sequences: 369166
Number of extensions: 1625540
Number of successful extensions: 4604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4568
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)