Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I01
(810 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUK5|INHBC_RAT Inhibin beta C chain precursor (Activin... 52 2e-06
sp|P55102|IHBA_HORSE Inhibin beta A chain precursor (Activi... 51 4e-06
sp|P07995|INHBA_BOVIN Inhibin beta A chain precursor (Activ... 50 7e-06
sp|P18331|INHBA_RAT Inhibin beta A chain precursor (Activin... 50 7e-06
sp|P08476|INHBA_HUMAN Inhibin beta A chain precursor (Activ... 50 7e-06
sp|Q04998|INHBA_MOUSE Inhibin beta A chain precursor (Activ... 50 7e-06
sp|P03970|INHBA_PIG Inhibin beta A chain precursor (Activin... 50 7e-06
sp|P43032|INHBA_SHEEP Inhibin beta A chain precursor (Activ... 50 7e-06
sp|P55104|INHBC_MOUSE Inhibin beta C chain precursor (Activ... 50 1e-05
sp|P58166|INHBE_HUMAN Inhibin beta E chain precursor (Activ... 48 3e-05
>sp|Q9WUK5|INHBC_RAT Inhibin beta C chain precursor (Activin beta-C chain)
Length = 351
Score = 52.0 bits (123), Expect = 2e-06
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTP---- 631
R +RG NC + CC Q F V ++G + ++ P+ +N+C G+C
Sbjct: 231 RVRRRGI--NCQGLSRMCCRQEFFVDFREIGWHDWIIQPEGYAMNFCTGQCPLHVAGMPG 288
Query: 632 -QRSNHAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
S H + LLK + ++ + R SCC P S L + Y + +NI+KT + DM
Sbjct: 289 ISASFHTAVLNLLKANTDAGTARR-----GSCCVPTSRRPLSLLYYDRDSNIVKTDIPDM 343
>sp|P55102|IHBA_HORSE Inhibin beta A chain precursor (Activin beta-A chain)
Length = 426
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
R +RG C CC + F V+ D+G + +++P H NYC GEC + S
Sbjct: 306 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 363
Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
+ + ++ +KSCC P + + Y + NI+K + +M
Sbjct: 364 SSLSFHSTVINQYRLRGHNPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 418
>sp|P07995|INHBA_BOVIN Inhibin beta A chain precursor (Activin beta-A chain)
Length = 425
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
R +RG C CC + F V+ D+G + +++P H NYC GEC + S
Sbjct: 305 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 362
Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
+ + + +KSCC P + + Y + NI+K + +M
Sbjct: 363 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 417
>sp|P18331|INHBA_RAT Inhibin beta A chain precursor (Activin beta-A chain)
Length = 424
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
R +RG C CC + F V+ D+G + +++P H NYC GEC + S
Sbjct: 304 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 361
Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
+ + + +KSCC P + + Y + NI+K + +M
Sbjct: 362 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 416
>sp|P08476|INHBA_HUMAN Inhibin beta A chain precursor (Activin beta-A chain) (Erythroid
differentiation protein) (EDF)
Length = 426
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
R +RG C CC + F V+ D+G + +++P H NYC GEC + S
Sbjct: 306 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 363
Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
+ + + +KSCC P + + Y + NI+K + +M
Sbjct: 364 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 418
>sp|Q04998|INHBA_MOUSE Inhibin beta A chain precursor (Activin beta-A chain)
Length = 424
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
R +RG C CC + F V+ D+G + +++P H NYC GEC + S
Sbjct: 304 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 361
Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
+ + + +KSCC P + + Y + NI+K + +M
Sbjct: 362 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 416
>sp|P03970|INHBA_PIG Inhibin beta A chain precursor (Activin beta-A chain)
Length = 424
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
R +RG C CC + F V+ D+G + +++P H NYC GEC + S
Sbjct: 304 RRRRRGL--ECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 361
Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
+ + + +KSCC P + + Y + NI+K + +M
Sbjct: 362 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 416
>sp|P43032|INHBA_SHEEP Inhibin beta A chain precursor (Activin beta-A chain)
Length = 425
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTPQRSN 643
R +RG C CC + F V+ D+G + +++P H NYC GEC + S
Sbjct: 305 RRRRRGL--ECDGKVNICCKKQFYVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG 362
Query: 644 HAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
+ + + +KSCC P + + Y + NI+K + +M
Sbjct: 363 SSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNM 417
>sp|P55104|INHBC_MOUSE Inhibin beta C chain precursor (Activin beta-C chain)
Length = 352
Score = 49.7 bits (117), Expect = 1e-05
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Frame = +2
Query: 467 RSAQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTP---- 631
R +RG +C + CC Q F V ++G + ++ P+ +N+C G+C
Sbjct: 232 RVRRRGI--DCQGASRMCCRQEFFVDFREIGWNDWIIQPEGYAMNFCTGQCPLHVAGMPG 289
Query: 632 -QRSNHAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
S H + LLK + + + R SCC P S L + Y + +NI+KT + DM
Sbjct: 290 ISASFHTAVLNLLKANAAAGTTGR-----GSCCVPTSRRPLSLLYYDRDSNIVKTDIPDM 344
>sp|P58166|INHBE_HUMAN Inhibin beta E chain precursor (Activin beta-E chain)
Length = 350
Score = 48.1 bits (113), Expect = 3e-05
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Frame = +2
Query: 473 AQRGFPKNCTTTTIFCCMQTFTVTPADLGLQN-LVSPDVIHLNYCRGECNNFTP-----Q 634
A+R P C T CC + V +LG ++ ++ P+ LNYC G+C
Sbjct: 233 ARRRTP-TCEPATPLCCRRDHYVDFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIA 291
Query: 635 RSNHAKYIYLLKRSKNSRLSARQLEQMKSCCTPKSYNSLQIQYREYSNNIMKTLVNDM 808
S H+ LLK + S SCC P + L + Y +++ N++KT V DM
Sbjct: 292 ASFHSAVFSLLKANNPWPAST-------SCCVPTARRPLSLLYLDHNGNVVKTDVPDM 342
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,399,034
Number of Sequences: 369166
Number of extensions: 1625540
Number of successful extensions: 4604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4568
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)