Planaria EST Database


DrC_02523

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02523
         (410 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BP27|CJ078_MOUSE  Protein C10orf78 homolog                    30   1.4  
sp|Q8NGZ3|O13G1_HUMAN  Olfactory receptor 13G1                     29   4.2  
sp|Q56308|PIMT_THEMA  Protein-L-isoaspartate O-methyltransfe...    28   7.1  
sp|Q97GI9|DAPA1_CLOAB  Dihydrodipicolinate synthase 1 (DHDPS 1)    28   7.1  
sp|P56415|MOBA_HELPY  Probable molybdopterin-guanine dinucle...    28   9.3  
sp|P02718|ACHD_TORCA  Acetylcholine receptor protein, delta ...    28   9.3  
>sp|Q8BP27|CJ078_MOUSE Protein C10orf78 homolog
          Length = 319

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 143 YQIYNDEDKLKNLLVSWSICDNKQFCEVRN 232
           Y+I ND  +L+NL+  W  C  +  CE+++
Sbjct: 252 YRIKNDVTELENLIKKWRKCGQRLLCELQS 281
>sp|Q8NGZ3|O13G1_HUMAN Olfactory receptor 13G1
          Length = 307

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -2

Query: 244 NYSAVSNFAKLFIIANTPRNQ*IFQLVFIIIYLVSDLSSKIINLLKI 104
           N+S V+ F  L +    P  Q I  L F+I+YLV+ L + +I + KI
Sbjct: 2   NHSVVTEFIILGL-TKKPELQGIIFLFFLIVYLVAFLGNMLIIIAKI 47
>sp|Q56308|PIMT_THEMA Protein-L-isoaspartate O-methyltransferase (Protein-beta-aspartate
           methyltransferase) (PIMT) (Protein L-isoaspartyl
           methyltransferase) (L-isoaspartyl protein carboxyl
           methyltransferase)
          Length = 317

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 140 RYQIYNDEDKLKNLLVSWSICDNKQF 217
           R +IY D  +++NLL  W  C  + F
Sbjct: 273 RMRIYGDAPEIENLLTQWESCGYRSF 298
>sp|Q97GI9|DAPA1_CLOAB Dihydrodipicolinate synthase 1 (DHDPS 1)
          Length = 293

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 7   NENCFTYFDFNTIDCSFIKDFTLNKINQTMQSKSSTS*LFYWTNPIP 147
           ++ CF+YF   T D           +N  + + S T+ LF  TNPIP
Sbjct: 216 HDMCFSYFQGKTTDA----------LNLQLDTLSLTNSLFIETNPIP 252
>sp|P56415|MOBA_HELPY Probable molybdopterin-guanine dinucleotide biosynthesis protein A
          Length = 201

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 102 QIFNKLIILLDKS---DTKYIMMKTS*KIYWFLGVFAIINSFAKLETAE*FFIP 254
           ++F K+II   KS   +  Y++ K S     F  +F I N+F  L+T   FFIP
Sbjct: 52  KLFKKVIISTKKSYELNAPYLLEKES---DLFSPLFGIHNAFLTLQTPYIFFIP 102
>sp|P02718|ACHD_TORCA Acetylcholine receptor protein, delta subunit precursor
          Length = 522

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
 Frame = +2

Query: 95  CKANLQQVNYFTGQIRYQIYNDEDKLKNLLVSWSICDNKQFCEVRNGRIV-------LYP 253
           C      +NY   +I   +  D    K+  + W I D + F E     I+       +YP
Sbjct: 165 CSLKFTALNYDANEITMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYP 224

Query: 254 KMTYSGTRY 280
               +GT Y
Sbjct: 225 DKFPNGTNY 233
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,308,300
Number of Sequences: 369166
Number of extensions: 776835
Number of successful extensions: 2082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)