Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_H19
(410 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BP27|CJ078_MOUSE Protein C10orf78 homolog 30 1.4
sp|Q8NGZ3|O13G1_HUMAN Olfactory receptor 13G1 29 4.2
sp|Q56308|PIMT_THEMA Protein-L-isoaspartate O-methyltransfe... 28 7.1
sp|Q97GI9|DAPA1_CLOAB Dihydrodipicolinate synthase 1 (DHDPS 1) 28 7.1
sp|P56415|MOBA_HELPY Probable molybdopterin-guanine dinucle... 28 9.3
sp|P02718|ACHD_TORCA Acetylcholine receptor protein, delta ... 28 9.3
>sp|Q8BP27|CJ078_MOUSE Protein C10orf78 homolog
Length = 319
Score = 30.4 bits (67), Expect = 1.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 143 YQIYNDEDKLKNLLVSWSICDNKQFCEVRN 232
Y+I ND +L+NL+ W C + CE+++
Sbjct: 252 YRIKNDVTELENLIKKWRKCGQRLLCELQS 281
>sp|Q8NGZ3|O13G1_HUMAN Olfactory receptor 13G1
Length = 307
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -2
Query: 244 NYSAVSNFAKLFIIANTPRNQ*IFQLVFIIIYLVSDLSSKIINLLKI 104
N+S V+ F L + P Q I L F+I+YLV+ L + +I + KI
Sbjct: 2 NHSVVTEFIILGL-TKKPELQGIIFLFFLIVYLVAFLGNMLIIIAKI 47
>sp|Q56308|PIMT_THEMA Protein-L-isoaspartate O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein L-isoaspartyl
methyltransferase) (L-isoaspartyl protein carboxyl
methyltransferase)
Length = 317
Score = 28.1 bits (61), Expect = 7.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 140 RYQIYNDEDKLKNLLVSWSICDNKQF 217
R +IY D +++NLL W C + F
Sbjct: 273 RMRIYGDAPEIENLLTQWESCGYRSF 298
>sp|Q97GI9|DAPA1_CLOAB Dihydrodipicolinate synthase 1 (DHDPS 1)
Length = 293
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 7 NENCFTYFDFNTIDCSFIKDFTLNKINQTMQSKSSTS*LFYWTNPIP 147
++ CF+YF T D +N + + S T+ LF TNPIP
Sbjct: 216 HDMCFSYFQGKTTDA----------LNLQLDTLSLTNSLFIETNPIP 252
>sp|P56415|MOBA_HELPY Probable molybdopterin-guanine dinucleotide biosynthesis protein A
Length = 201
Score = 27.7 bits (60), Expect = 9.3
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 102 QIFNKLIILLDKS---DTKYIMMKTS*KIYWFLGVFAIINSFAKLETAE*FFIP 254
++F K+II KS + Y++ K S F +F I N+F L+T FFIP
Sbjct: 52 KLFKKVIISTKKSYELNAPYLLEKES---DLFSPLFGIHNAFLTLQTPYIFFIP 102
>sp|P02718|ACHD_TORCA Acetylcholine receptor protein, delta subunit precursor
Length = 522
Score = 27.7 bits (60), Expect = 9.3
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Frame = +2
Query: 95 CKANLQQVNYFTGQIRYQIYNDEDKLKNLLVSWSICDNKQFCEVRNGRIV-------LYP 253
C +NY +I + D K+ + W I D + F E I+ +YP
Sbjct: 165 CSLKFTALNYDANEITMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYP 224
Query: 254 KMTYSGTRY 280
+GT Y
Sbjct: 225 DKFPNGTNY 233
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,308,300
Number of Sequences: 369166
Number of extensions: 776835
Number of successful extensions: 2082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)