Planaria EST Database


DrC_02522

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02522
         (614 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q11188|YPD9_CAEEL  Hypothetical protein C05D11.9 in chrom...    32   0.99 
sp|P41812|POP1_YEAST  Ribonucleases P/MRP protein subunit PO...    31   2.2  
sp|O20206|PHEA_PORYE  R-phycoerythrin alpha chain                  31   2.2  
sp|O49843|PHEA_PORTE  R-phycoerythrin alpha chain                  31   2.2  
sp|P51368|PHEA_PORPU  R-phycoerythrin alpha chain                  31   2.2  
sp|Q16666|IF16_HUMAN  Gamma-interferon-inducible protein Ifi...    30   3.8  
sp|Q01921|PHEA_POLBO  R-phycoerythrin alpha chain                  30   6.4  
sp|Q10809|YS85_MYCTU  Hypothetical protein Rv2885c/MT2953 pr...    29   8.4  
>sp|Q11188|YPD9_CAEEL Hypothetical protein C05D11.9 in chromosome III
          Length = 752

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 174 RPIIGYLQLADQSLIVGKGCGFGFVSLYQLVSLGQSHQPCSRHVWIKNTNTRTF 335
           R IIG L   +QS++ G G G G++    L  +  ++      V ++N+ ++ +
Sbjct: 685 REIIGRLVAGEQSVLAGHGVGIGYICANTLSLIASNYHKSKTVVMVRNSTSKYY 738
>sp|P41812|POP1_YEAST Ribonucleases P/MRP protein subunit POP1 (RNases P/MRP 100.4 kDa
           subunit) (RNA processing protein POP1)
          Length = 875

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 171 IRPIIGYLQLADQSLIVGKGCGFGFVSLYQLVSLGQSHQPCSRHVWIKNTNTRTFVAGKL 350
           +  +IG++      L  G G G GF+  +  +      QP +R+V I+N  T T+  G+ 
Sbjct: 817 VHDLIGFITSGTYHLNCGNGMGIGFIDHHAAI-----RQP-TRYVLIRNVGTNTYRLGEW 870

Query: 351 S 353
           S
Sbjct: 871 S 871
>sp|O20206|PHEA_PORYE R-phycoerythrin alpha chain
          Length = 164

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +3

Query: 54  LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
           LE   K+AS++  ++  + D C    S L+ P E+G      N   R +  Y++L +  L
Sbjct: 38  LEAAEKLASNHEAVVKEAGDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCL 97

Query: 216 IVG 224
           +VG
Sbjct: 98  VVG 100
>sp|O49843|PHEA_PORTE R-phycoerythrin alpha chain
          Length = 164

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +3

Query: 54  LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
           LE   K+AS++  ++  + D C    S L+ P E+G      N   R +  Y++L +  L
Sbjct: 38  LEAAEKLASNHEAVVKEAGDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCL 97

Query: 216 IVG 224
           +VG
Sbjct: 98  VVG 100
>sp|P51368|PHEA_PORPU R-phycoerythrin alpha chain
          Length = 164

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +3

Query: 54  LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
           LE   K+AS++  ++  + D C    S L+ P E+G      N   R +  Y++L +  L
Sbjct: 38  LEAAEKLASNHEAVVKEAGDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCL 97

Query: 216 IVG 224
           +VG
Sbjct: 98  VVG 100
>sp|Q16666|IF16_HUMAN Gamma-interferon-inducible protein Ifi-16 (Interferon-inducible
           myeloid differentiation transcriptional activator) (IFI
           16)
          Length = 785

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 64  SARLPVPMR*LWLPAPMTATIPDRHLNNPRNPETT 168
           S +LP   R L  P+  + T P+ HL  P+ P TT
Sbjct: 401 SMKLPQEQRQLPYPSEASTTFPESHLRTPQMPPTT 435
>sp|Q01921|PHEA_POLBO R-phycoerythrin alpha chain
          Length = 164

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +3

Query: 54  LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
           LE   K+ S++  ++  + D C      L+ P E+G      N   R I  Y++L + +L
Sbjct: 38  LEAAEKLGSNHEAVVKEAGDACFSKYGYLKNPGEAGENQEKINKCYRDIDHYMRLINYTL 97

Query: 216 IVG 224
           +VG
Sbjct: 98  VVG 100
>sp|Q10809|YS85_MYCTU Hypothetical protein Rv2885c/MT2953 precursor
          Length = 460

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -3

Query: 129 WDRCSHRGWQP*LP-----HWNWQPCRDIREPPEPVPISRARRTDRD 4
           W  CS   +   +      +WNWQ CR  +   + V + R ++  RD
Sbjct: 92  WPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRD 138
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,431,584
Number of Sequences: 369166
Number of extensions: 1643962
Number of successful extensions: 4529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4529
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)