Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_H04
(614 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q11188|YPD9_CAEEL Hypothetical protein C05D11.9 in chrom... 32 0.99
sp|P41812|POP1_YEAST Ribonucleases P/MRP protein subunit PO... 31 2.2
sp|O20206|PHEA_PORYE R-phycoerythrin alpha chain 31 2.2
sp|O49843|PHEA_PORTE R-phycoerythrin alpha chain 31 2.2
sp|P51368|PHEA_PORPU R-phycoerythrin alpha chain 31 2.2
sp|Q16666|IF16_HUMAN Gamma-interferon-inducible protein Ifi... 30 3.8
sp|Q01921|PHEA_POLBO R-phycoerythrin alpha chain 30 6.4
sp|Q10809|YS85_MYCTU Hypothetical protein Rv2885c/MT2953 pr... 29 8.4
>sp|Q11188|YPD9_CAEEL Hypothetical protein C05D11.9 in chromosome III
Length = 752
Score = 32.3 bits (72), Expect = 0.99
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 174 RPIIGYLQLADQSLIVGKGCGFGFVSLYQLVSLGQSHQPCSRHVWIKNTNTRTF 335
R IIG L +QS++ G G G G++ L + ++ V ++N+ ++ +
Sbjct: 685 REIIGRLVAGEQSVLAGHGVGIGYICANTLSLIASNYHKSKTVVMVRNSTSKYY 738
>sp|P41812|POP1_YEAST Ribonucleases P/MRP protein subunit POP1 (RNases P/MRP 100.4 kDa
subunit) (RNA processing protein POP1)
Length = 875
Score = 31.2 bits (69), Expect = 2.2
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 171 IRPIIGYLQLADQSLIVGKGCGFGFVSLYQLVSLGQSHQPCSRHVWIKNTNTRTFVAGKL 350
+ +IG++ L G G G GF+ + + QP +R+V I+N T T+ G+
Sbjct: 817 VHDLIGFITSGTYHLNCGNGMGIGFIDHHAAI-----RQP-TRYVLIRNVGTNTYRLGEW 870
Query: 351 S 353
S
Sbjct: 871 S 871
>sp|O20206|PHEA_PORYE R-phycoerythrin alpha chain
Length = 164
Score = 31.2 bits (69), Expect = 2.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +3
Query: 54 LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
LE K+AS++ ++ + D C S L+ P E+G N R + Y++L + L
Sbjct: 38 LEAAEKLASNHEAVVKEAGDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCL 97
Query: 216 IVG 224
+VG
Sbjct: 98 VVG 100
>sp|O49843|PHEA_PORTE R-phycoerythrin alpha chain
Length = 164
Score = 31.2 bits (69), Expect = 2.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +3
Query: 54 LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
LE K+AS++ ++ + D C S L+ P E+G N R + Y++L + L
Sbjct: 38 LEAAEKLASNHEAVVKEAGDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCL 97
Query: 216 IVG 224
+VG
Sbjct: 98 VVG 100
>sp|P51368|PHEA_PORPU R-phycoerythrin alpha chain
Length = 164
Score = 31.2 bits (69), Expect = 2.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +3
Query: 54 LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
LE K+AS++ ++ + D C S L+ P E+G N R + Y++L + L
Sbjct: 38 LEAAEKLASNHEAVVKEAGDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCL 97
Query: 216 IVG 224
+VG
Sbjct: 98 VVG 100
>sp|Q16666|IF16_HUMAN Gamma-interferon-inducible protein Ifi-16 (Interferon-inducible
myeloid differentiation transcriptional activator) (IFI
16)
Length = 785
Score = 30.4 bits (67), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 64 SARLPVPMR*LWLPAPMTATIPDRHLNNPRNPETT 168
S +LP R L P+ + T P+ HL P+ P TT
Sbjct: 401 SMKLPQEQRQLPYPSEASTTFPESHLRTPQMPPTT 435
>sp|Q01921|PHEA_POLBO R-phycoerythrin alpha chain
Length = 164
Score = 29.6 bits (65), Expect = 6.4
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +3
Query: 54 LECLGKVASSNAVIMAASPDDCNDPRSTLEQPQESG------NDLIRPIIGYLQLADQSL 215
LE K+ S++ ++ + D C L+ P E+G N R I Y++L + +L
Sbjct: 38 LEAAEKLGSNHEAVVKEAGDACFSKYGYLKNPGEAGENQEKINKCYRDIDHYMRLINYTL 97
Query: 216 IVG 224
+VG
Sbjct: 98 VVG 100
>sp|Q10809|YS85_MYCTU Hypothetical protein Rv2885c/MT2953 precursor
Length = 460
Score = 29.3 bits (64), Expect = 8.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = -3
Query: 129 WDRCSHRGWQP*LP-----HWNWQPCRDIREPPEPVPISRARRTDRD 4
W CS + + +WNWQ CR + + V + R ++ RD
Sbjct: 92 WPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRD 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,431,584
Number of Sequences: 369166
Number of extensions: 1643962
Number of successful extensions: 4529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4529
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)