Planaria EST Database


DrC_02516

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02516
         (854 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50458|LHX2_HUMAN  LIM/homeobox protein Lhx2 (Homeobox pr...   121   2e-27
sp|Q9Z0S2|LHX2_MOUSE  LIM/homeobox protein Lhx2                   121   3e-27
sp|Q9NQ69|LHX9_HUMAN  LIM/homeobox protein Lhx9                   117   3e-26
sp|Q9WUH2|LHX9_MOUSE  LIM/homeobox protein Lhx9                   117   4e-26
sp|P36198|LHX2_RAT  LIM/homeobox protein Lhx2 (Homeobox prot...   115   2e-25
sp|P29673|APTE_DROME  Protein apterous                            112   1e-24
sp|Q8IRC7|AWH_DROME  LIM/homeobox protein Awh (Protein arrow...    74   5e-13
sp|O88706|LHX6_MOUSE  LIM/homeobox protein Lhx6                    72   3e-12
sp|O35652|LHX8_MOUSE  LIM/homeobox protein Lhx8 (LIM homeodo...    71   3e-12
sp|Q9UPM6|LHX61_HUMAN  LIM/homeobox protein Lhx6.1 (Lhx6)          71   4e-12
>sp|P50458|LHX2_HUMAN LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 406

 Score =  121 bits (304), Expect = 2e-27
 Identities = 74/149 (49%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
 Frame = +1

Query: 52  RQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQNARAKFRRS 231
           + KR+RTSFKH QLRTMK+YF++NHNPD+KDL+QL+QKTGL+KRVLQVWFQNARAKFRR+
Sbjct: 265 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 324

Query: 232 LCRQ--TGVMCGPSANQLQMPNVFDDNSLISIDKNGNYSTKTKMTTFNDISSSILNHSVQ 405
           L RQ  TGV     A  LQ        S +S   N + S  +  TT  D++S  L     
Sbjct: 325 LLRQENTGVDKSTDA-ALQTGTPSGPASELS---NASLSPSSTPTTLTDLTSPTLPTVTS 380

Query: 406 NNHRLCSMNELNYQNQNTNGPLQTTMTNL 492
               + +    N +    + P QTT+TNL
Sbjct: 381 ----VLTSVPGNLEGHEPHSPSQTTLTNL 405
>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2
          Length = 406

 Score =  121 bits (303), Expect = 3e-27
 Identities = 74/149 (49%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
 Frame = +1

Query: 52  RQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQNARAKFRRS 231
           + KR+RTSFKH QLRTMK+YF++NHNPD+KDL+QL+QKTGL+KRVLQVWFQNARAKFRR+
Sbjct: 265 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 324

Query: 232 LCRQ--TGVMCGPSANQLQMPNVFDDNSLISIDKNGNYSTKTKMTTFNDISSSILNHSVQ 405
           L RQ  TGV     A  LQ        S +S   N + S  +  TT  D++S  L     
Sbjct: 325 LLRQENTGVDKTSDAT-LQTGTPSGPASELS---NASLSPSSTPTTLTDLTSPTLPTVTS 380

Query: 406 NNHRLCSMNELNYQNQNTNGPLQTTMTNL 492
               + +    N +    + P QTT+TNL
Sbjct: 381 ----VLTSVPGNLEGHEPHSPSQTTLTNL 405
>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9
          Length = 388

 Score =  117 bits (294), Expect = 3e-26
 Identities = 67/148 (45%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
 Frame = +1

Query: 52  RQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQNARAKFRRS 231
           + KR+RTSFKH QLRTMK+YF++NHNPD+KDL+QL+QKTGL+KRVLQVWFQNARAKFRR+
Sbjct: 257 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 316

Query: 232 LCRQ-TGVMCGPSANQLQMPNVFDDNSLISIDKNGNYSTKTKMTTFNDISSSILNHSVQN 408
           L RQ  G +       L  P   D  +L         +     TT  D+++  +      
Sbjct: 317 LLRQENGGVDKADGTSLPAPPSADSGAL---------TPPGTATTLTDLTNPTIT----- 362

Query: 409 NHRLCSMNELNYQNQNTNGPLQTTMTNL 492
              + +    N  +  +  P QTT+TNL
Sbjct: 363 ---VVTSVTSNMDSHESGSPSQTTLTNL 387
>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9
          Length = 388

 Score =  117 bits (293), Expect = 4e-26
 Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
 Frame = +1

Query: 52  RQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQNARAKFRRS 231
           + KR+RTSFKH QLRTMK+YF++NHNPD+KDL+QL+QKTGL+KRVLQVWFQNARAKFRR+
Sbjct: 257 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 316

Query: 232 LCRQ-TGVMCGPSANQLQMPNVFDDNSLISIDKNGNYSTKTKMTTFNDISSSILNHSVQN 408
           L RQ  G +       L  P   D  +L          T T +T   + + +++   +  
Sbjct: 317 LLRQENGGVDKADGTSLPAPPSADSGALTP------PGTATTLTDLTNPTVTVVTTVIS- 369

Query: 409 NHRLCSMNELNYQNQNTNGPLQTTMTNL 492
                     N  +     P QTT+TNL
Sbjct: 370 ----------NMDSHEPGSPSQTTLTNL 387
>sp|P36198|LHX2_RAT LIM/homeobox protein Lhx2 (Homeobox protein LH-2)
          Length = 426

 Score =  115 bits (288), Expect = 2e-25
 Identities = 66/115 (57%), Positives = 81/115 (70%), Gaps = 2/115 (1%)
 Frame = +1

Query: 52  RQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQNARAKFRRS 231
           + KR+RTSFKH QLRTMK+YF++NHNPD+KDL+QL+QKTGL+KRVLQVWFQNARAKFRR+
Sbjct: 263 KTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 322

Query: 232 LCRQ--TGVMCGPSANQLQMPNVFDDNSLISIDKNGNYSTKTKMTTFNDISSSIL 390
           L RQ  TGV     A  LQ        S +S   N + S  +  TT  D++S  L
Sbjct: 323 LLRQENTGVDKTSDAT-LQTGTPSGPASELS---NASLSPSSTPTTLTDLTSPTL 373
>sp|P29673|APTE_DROME Protein apterous
          Length = 469

 Score =  112 bits (281), Expect = 1e-24
 Identities = 52/70 (74%), Positives = 63/70 (90%)
 Frame = +1

Query: 40  SNNLRQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQNARAK 219
           S++ R KR+RTSFKH QLRTMK+YF++NHNPD+KDL+QLSQKTGL KRVLQVWFQNARAK
Sbjct: 362 SSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAK 421

Query: 220 FRRSLCRQTG 249
           +RR + +Q G
Sbjct: 422 WRRMMMKQDG 431
>sp|Q8IRC7|AWH_DROME LIM/homeobox protein Awh (Protein arrowhead)
          Length = 275

 Score = 73.9 bits (180), Expect = 5e-13
 Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
 Frame = +1

Query: 19  QGLSKKGSNNLRQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVW 198
           +G    G +  + KRVRT+F  +QL+ ++A F ++ NPD +DL +++  TGLSKRV QVW
Sbjct: 136 EGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVW 195

Query: 199 FQNARAKFRRSLCRQTGVMCGPSAN------QLQMPNVFDDNSLISIDKNGN 336
           FQN+RA+ ++ +      +  P  +       LQ+   F +N+   +  NG+
Sbjct: 196 FQNSRARQKKHIHAGKNKIREPEGSSFARHINLQLTYSFQNNAQNPMHLNGS 247
>sp|O88706|LHX6_MOUSE LIM/homeobox protein Lhx6
          Length = 361

 Score = 71.6 bits (174), Expect = 3e-12
 Identities = 36/93 (38%), Positives = 59/93 (63%)
 Frame = +1

Query: 28  SKKGSNNLRQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQN 207
           S++ S     KR RTSF  +QL+ M+A F+ ++NPD++ L++L+  TGLS+RV+QVWFQN
Sbjct: 228 SEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQN 287

Query: 208 ARAKFRRSLCRQTGVMCGPSANQLQMPNVFDDN 306
            RA+ ++   +      GP     ++P+   D+
Sbjct: 288 CRARHKKHTPQHPVRPLGPPT---RLPSALSDD 317
>sp|O35652|LHX8_MOUSE LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)
          Length = 367

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 30/57 (52%), Positives = 47/57 (82%)
 Frame = +1

Query: 58  KRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQNARAKFRR 228
           KR RTSF   QL+ M+A F+ ++NPD++ L++L+++TGLS+RV+QVWFQN RA+ ++
Sbjct: 247 KRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK 303
>sp|Q9UPM6|LHX61_HUMAN LIM/homeobox protein Lhx6.1 (Lhx6)
          Length = 363

 Score = 70.9 bits (172), Expect = 4e-12
 Identities = 32/67 (47%), Positives = 50/67 (74%)
 Frame = +1

Query: 28  SKKGSNNLRQKRVRTSFKHQQLRTMKAYFSMNHNPDSKDLRQLSQKTGLSKRVLQVWFQN 207
           S++ S     KR RTSF  +QL+ M+A F+ ++NPD++ L++L+  TGLS+RV+QVWFQN
Sbjct: 210 SEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQN 269

Query: 208 ARAKFRR 228
            RA+ ++
Sbjct: 270 CRARHKK 276
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,090,203
Number of Sequences: 369166
Number of extensions: 1917407
Number of successful extensions: 6740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6652
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)