Planaria EST Database


DrC_02513

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02513
         (583 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13247|SFRS6_HUMAN  Splicing factor, arginine/serine-rich...   139   4e-33
sp|Q08170|SFRS4_HUMAN  Splicing factor, arginine/serine-rich...   139   7e-33
sp|Q8VE97|SFRS4_MOUSE  Splicing factor, arginine/serine-rich 4    139   7e-33
sp|P26686|SRR55_DROME  Serine-arginine protein 55 (SRP55) (E...   130   2e-30
sp|Q09167|SFRS5_RAT  Splicing factor, arginine/serine-rich 5...   127   2e-29
sp|Q13243|SFRS5_HUMAN  Splicing factor, arginine/serine-rich...   126   4e-29
sp|O35326|SFRS5_MOUSE  Splicing factor, arginine/serine-rich...   105   6e-23
sp|Q23121|RSP1_CAEEL  Probable splicing factor, arginine/ser...   102   5e-22
sp|P78814|SRP2_SCHPO  Pre-mRNA splicing factor srp2               101   1e-21
sp|Q23120|RSP2_CAEEL  Probable splicing factor, arginine/ser...    99   8e-21
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
           SRP55)
          Length = 344

 Score =  139 bits (351), Expect = 4e-33
 Identities = 71/147 (48%), Positives = 91/147 (61%), Gaps = 16/147 (10%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXXNA--------- 154
           GFVEF+  RDADDA+++L+ KEL G RV++EH                            
Sbjct: 38  GFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTS 97

Query: 155 -------PIRTDYRLLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEGIVEFKTRA 313
                  P+RT+YRL+VENL SR SWQDLKD MR+ GEV +ADAHK R NEG++EF++ +
Sbjct: 98  GRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYS 157

Query: 314 DMKAALKKFDGYEISGRKLRVYEDNVR 394
           DMK AL K DG EI+GR +R+ ED  R
Sbjct: 158 DMKRALDKLDGTEINGRNIRLIEDKPR 184
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
           SRP75) (SRP001LB)
          Length = 494

 Score =  139 bits (349), Expect = 7e-33
 Identities = 71/143 (49%), Positives = 92/143 (64%), Gaps = 10/143 (6%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXXN---------- 151
           GFVEFD  RDADDA+++L+ K+L G RV++EH                            
Sbjct: 38  GFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYG 97

Query: 152 APIRTDYRLLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEGIVEFKTRADMKAAL 331
            P RT+YRL+VENL SR SWQDLKD MR+ GEV +ADAHK R+NEG++EF + +DMK AL
Sbjct: 98  PPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRAL 157

Query: 332 KKFDGYEISGRKLRVYEDNVRGR 400
           +K DG E++GRK+R+ ED    R
Sbjct: 158 EKLDGTEVNGRKIRLVEDKPGSR 180
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
          Length = 489

 Score =  139 bits (349), Expect = 7e-33
 Identities = 71/143 (49%), Positives = 92/143 (64%), Gaps = 10/143 (6%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXXN---------- 151
           GFVEFD  RDADDA+++L+ K+L G RV++EH                            
Sbjct: 38  GFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYG 97

Query: 152 APIRTDYRLLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEGIVEFKTRADMKAAL 331
            P RT+YRL+VENL SR SWQDLKD MR+ GEV +ADAHK R+NEG++EF + +DMK AL
Sbjct: 98  PPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRAL 157

Query: 332 KKFDGYEISGRKLRVYEDNVRGR 400
           +K DG E++GRK+R+ ED    R
Sbjct: 158 EKLDGTEVNGRKIRLVEDKPGSR 180
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
           bracketing protein) (B52 protein)
          Length = 376

 Score =  130 bits (328), Expect = 2e-30
 Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 24/158 (15%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXXNA--------- 154
           GFVEF+  RDADDA+++L+ KEL G RVV+E                             
Sbjct: 40  GFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRY 99

Query: 155 ---------------PIRTDYRLLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEG 289
                          P+RT+YRL+VENL SRVSWQDLKD MR+ GEV +ADAHK+R+NEG
Sbjct: 100 NEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEG 159

Query: 290 IVEFKTRADMKAALKKFDGYEISGRKLRVYEDNVRGRT 403
           +VEF + +DMK A++K D  E++GR++ + ED   GR+
Sbjct: 160 VVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRS 197
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Insulin-induced growth response protein CL-4)
           (Delayed-early protein HRS)
          Length = 269

 Score =  127 bits (320), Expect = 2e-29
 Identities = 69/146 (47%), Positives = 91/146 (62%), Gaps = 12/146 (8%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXX----------- 148
           GFVEF+  RDADDA+++L  KEL   RV +EH                            
Sbjct: 40  GFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRR 99

Query: 149 NAP-IRTDYRLLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEGIVEFKTRADMKA 325
           NAP +RT+ RL+VENL SRVSWQDLKD MR+ GEV FADAH+ + NEG+VEF +  D+K 
Sbjct: 100 NAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKN 159

Query: 326 ALKKFDGYEISGRKLRVYEDNVRGRT 403
           A++K  G EI+GRK+++ E + R R+
Sbjct: 160 AIEKLSGKEINGRKIKLIEGSKRHRS 185
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Delayed-early protein HRS)
          Length = 272

 Score =  126 bits (316), Expect = 4e-29
 Identities = 68/143 (47%), Positives = 89/143 (62%), Gaps = 12/143 (8%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXX----------- 148
           GFVEF+  RDADDA+++L  KEL   RV +EH                            
Sbjct: 40  GFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRR 99

Query: 149 NAP-IRTDYRLLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEGIVEFKTRADMKA 325
           NAP +RT+ RL+VENL SRVSWQDLKD MR+ GEV FADAH+ + NEG+VEF +  D+K 
Sbjct: 100 NAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKN 159

Query: 326 ALKKFDGYEISGRKLRVYEDNVR 394
           A++K  G EI+GRK+++ E + R
Sbjct: 160 AIEKLSGKEINGRKIKLIEGSKR 182
>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
           SRP40) (Delayed-early protein HRS)
          Length = 270

 Score =  105 bits (263), Expect = 6e-23
 Identities = 61/147 (41%), Positives = 83/147 (56%), Gaps = 13/147 (8%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXXNA--------- 154
           GFVEF+  RDADDA+++L  KEL   RV +EH                  A         
Sbjct: 40  GFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRR 99

Query: 155 ---PIRTDYRLLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEGIVEFKTRADMKA 325
                +   RL+VENL SRVSWQDLKD MR+ GEV FADAH+ + NEG+VEF +  D+K 
Sbjct: 100 KCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKN 159

Query: 326 ALKKFD-GYEISGRKLRVYEDNVRGRT 403
           A++K     +++G K ++ E + R R+
Sbjct: 160 AIEKLSWKRKLTGEKSKLIEGSKRHRS 186
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding
           protein srp-5) (CeSRp75)
          Length = 312

 Score =  102 bits (255), Expect = 5e-22
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 35/169 (20%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXXNA--------- 154
           GFVEFD +RDA+DA+HDL+ KEL G RV+L++                            
Sbjct: 39  GFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSG 98

Query: 155 -------------------------PIRTDYRLLVENLPSRVSWQDLKDLMRKTG-EVMF 256
                                    P  T +R++VENL SR+SWQDLKD +R+ G E  +
Sbjct: 99  GGGGGRDRFDRYDRGPPRRESRYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTY 158

Query: 257 ADAHKRRQNEGIVEFKTRADMKAALKKFDGYEISGRKLRVYEDNVRGRT 403
           A+AHK R NE ++ F T +D+K  ++K DG +++GRK+++ +D+  GR+
Sbjct: 159 AEAHK-RPNEALLCFATPSDLKRCIEKCDGMDLNGRKIKMIDDSQAGRS 206
>sp|P78814|SRP2_SCHPO Pre-mRNA splicing factor srp2
          Length = 365

 Score =  101 bits (252), Expect = 1e-21
 Identities = 55/130 (42%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXXN--APIRTDYR 175
           GFVE +  RDA D ++D   KE  G R+V+E                      P RT +R
Sbjct: 40  GFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFR 99

Query: 176 LLVENLPSRVSWQDLKDLMRKTGEVMFADAHKRRQNEGIVEFKTRADMKAALKKFDGYEI 355
           L+VENL   VSWQDLKD+MRK GE  F DAH+     G+VEF T  DM+ AL   +G  I
Sbjct: 100 LIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVI 159

Query: 356 SGRKLRVYED 385
            G+ + + ED
Sbjct: 160 KGQAVTLRED 169
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 (RNA-binding
           protein srp-4) (CeSRp40)
          Length = 281

 Score = 99.0 bits (245), Expect = 8e-21
 Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 19/153 (12%)
 Frame = +2

Query: 2   GFVEFDSERDADDAIHDLHHKELAGGRVVLEHXXXXXXXXXXXXXXXXX----------- 148
           GFV+F  +RDADDA+HDL+ KEL G RV+LE                             
Sbjct: 38  GFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGE 97

Query: 149 -------NAPIRTDYRLLVENLPSRVSWQDLKDLMRKTG-EVMFADAHKRRQNEGIVEFK 304
                  + P  T +RL+++NL +R SWQD+KD +RK G E  +++AHKR  N+ IV F 
Sbjct: 98  RQFSNRYSRPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFT 157

Query: 305 TRADMKAALKKFDGYEISGRKLRVYEDNVRGRT 403
           +  D++ A+ K  G +++GRKL+   D  R R+
Sbjct: 158 SHDDLRDAMNKLQGEDLNGRKLKC-TDETRDRS 189
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,942,194
Number of Sequences: 369166
Number of extensions: 1011850
Number of successful extensions: 2892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2858
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)