Planaria EST Database


DrC_02511

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02511
         (786 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28092|CYLC2_BOVIN  Cylicin-2 (Cylicin II) (Multiple-band...    32   2.6  
sp|O17397|DIML_CAEEL  Diminuto-like protein                        31   3.4  
>sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)
          Length = 488

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 112 RQAAKRASHEVKKTMADEENVNSNVESIPSVEK 210
           +QAAK +S +VKK+  D++  +S  ESI S EK
Sbjct: 111 KQAAKPSSPKVKKSKEDKDKSDSEAESIVSKEK 143
>sp|O17397|DIML_CAEEL Diminuto-like protein
          Length = 525

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +1

Query: 544 FIIYFVLSL*IFIFKWVFGA*NKLMHAIKTAPFMHLK 654
           F++ F+L L  F+F  VF   N+++HA+ +AP  H++
Sbjct: 29  FVVPFLLPL-SFLFNTVFDFRNRIVHAVNSAPNAHVR 64
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,718,516
Number of Sequences: 369166
Number of extensions: 976635
Number of successful extensions: 1790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)