Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_F08
(786 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band... 32 2.6
sp|O17397|DIML_CAEEL Diminuto-like protein 31 3.4
>sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)
Length = 488
Score = 31.6 bits (70), Expect = 2.6
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 112 RQAAKRASHEVKKTMADEENVNSNVESIPSVEK 210
+QAAK +S +VKK+ D++ +S ESI S EK
Sbjct: 111 KQAAKPSSPKVKKSKEDKDKSDSEAESIVSKEK 143
>sp|O17397|DIML_CAEEL Diminuto-like protein
Length = 525
Score = 31.2 bits (69), Expect = 3.4
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 544 FIIYFVLSL*IFIFKWVFGA*NKLMHAIKTAPFMHLK 654
F++ F+L L F+F VF N+++HA+ +AP H++
Sbjct: 29 FVVPFLLPL-SFLFNTVFDFRNRIVHAVNSAPNAHVR 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,718,516
Number of Sequences: 369166
Number of extensions: 976635
Number of successful extensions: 1790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)