Planaria EST Database


DrC_02509

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02509
         (872 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P56287|EI2BE_SCHPO  Probable translation initiation facto...    32   2.3  
sp|P29098|RRPO_PMMVS  RNA-directed RNA polymerase (183 kDa p...    30   6.7  
sp|Q8NEV8|SLC2B_HUMAN  Slp homolog lacking C2 domains-b (Exo...    30   6.7  
sp|P89657|RRPO_PMMVJ  RNA-directed RNA polymerase (183 kDa p...    30   8.8  
>sp|P56287|EI2BE_SCHPO Probable translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor)
          Length = 678

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 105 FNENESLQLISELAEIDCNFSICSNN--TLNEIHFQYWSIRNSKDIGY 242
           FNE+E L++ ++L  IDC   ICSN+   L   +F Y  IR  KD  Y
Sbjct: 206 FNEHEELEVRNDL--IDCQIDICSNDVPALFTENFDYQDIR--KDFVY 249
>sp|P29098|RRPO_PMMVS RNA-directed RNA polymerase (183 kDa protein) [Contains:
            Methyltransferase/RNA helicase (MT/HEL) (126 kDa
            protein)]
          Length = 1612

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 61/287 (21%), Positives = 101/287 (35%), Gaps = 31/287 (10%)
 Frame = +3

Query: 90   CQLVRFNENESLQLISELAEIDCNFSICSNNTLNEIHFQYWSIRNSKDIGYMSYFRSFTV 269
            CQ  R   +E L L           S+CS        F Y    +++ I Y++   +F  
Sbjct: 899  CQYKRLFLDEGLMLHPGCVNFLVGMSLCSEA------FVYG---DTQQIPYINRVATFPY 949

Query: 270  PTQQKILR------NRNCLPCSKDLRLFSTSFQRFQ--CTSFIPSSCQSPIFQQP---NC 416
            P     L        R  L C  D+  F       Q  CTS +  S    + Q     N 
Sbjct: 950  PKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCTSSVTRSVSHEVIQGAAVMNP 1009

Query: 417  FKEPVK----QIMNAENQILQSKYFAFPQQMIKQTGNLF-----VRSIENQFRFVQCREN 569
              +P+K        ++  +L S+ +     + +  G  F     VR        +  +  
Sbjct: 1010 VSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069

Query: 570  DLLDSLYRYFLDILICSIVHKHFQIDIK----TNRYLLDQLQLDSSRRKHDGNNVFHKSV 737
             LL SL R+   I   ++V       ++     + YLLD  ++D S +        +K V
Sbjct: 1070 HLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLLDMYKVDVSTQXQLQIESVYKGV 1129

Query: 738  NLF-------PQQKLQFYKDPRFDAFGEVVKKISLDYDKMRREQRDN 857
            NLF           +Q+Y D        ++     +YD +  + R+N
Sbjct: 1130 NLFVAAPKTGDVSDMQYYYDKCLPGNSTILN----EYDAVTMQIREN 1172
>sp|Q8NEV8|SLC2B_HUMAN Slp homolog lacking C2 domains-b (Exophilin-5)
          Length = 1989

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 139  NSLRSTAISRSAPTTLSMKSISNIGRSETRKISVTCRISA-ALPFRHNRK 285
            N  +S   S S P++L   S  NIG S+TR+ S  C  S  A+PF  + K
Sbjct: 1412 NCQQSINSSNSGPSSLPALSEVNIGNSQTRRSSWECTGSGRAIPFTGSGK 1461
>sp|P89657|RRPO_PMMVJ RNA-directed RNA polymerase (183 kDa protein) [Contains:
            Methyltransferase/RNA helicase (MT/HEL) (126 kDa
            protein)]
          Length = 1612

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 61/287 (21%), Positives = 101/287 (35%), Gaps = 31/287 (10%)
 Frame = +3

Query: 90   CQLVRFNENESLQLISELAEIDCNFSICSNNTLNEIHFQYWSIRNSKDIGYMSYFRSFTV 269
            CQ  R   +E L L           S+CS        F Y    +++ I Y++   +F  
Sbjct: 899  CQYKRLFLDEGLMLHPGCVNFLVGMSLCSEA------FVYG---DTQQIPYINRVATFPY 949

Query: 270  PTQQKILR------NRNCLPCSKDLRLFSTSFQRFQ--CTSFIPSSCQSPIFQQP---NC 416
            P     L        R  L C  D+  F       Q  CTS +  S    + Q     N 
Sbjct: 950  PKHLSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCTSSVTRSVSHEVIQGAAVMNP 1009

Query: 417  FKEPVK----QIMNAENQILQSKYFAFPQQMIKQTGNLF-----VRSIENQFRFVQCREN 569
              +P+K        ++  +L S+ +     + +  G  F     VR        +  +  
Sbjct: 1010 VSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069

Query: 570  DLLDSLYRYFLDILICSIVHKHFQIDIK----TNRYLLDQLQLDSSRRKHDGNNVFHKSV 737
             LL SL R+   I   ++V       ++     + YLLD  ++D S +        +K V
Sbjct: 1070 HLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLLDMYKVDVSTQYQLQIESVYKGV 1129

Query: 738  NLF-------PQQKLQFYKDPRFDAFGEVVKKISLDYDKMRREQRDN 857
            NLF           +Q+Y D        ++     +YD +  + R+N
Sbjct: 1130 NLFVAAPKTGDVSDMQYYYDKCLPGNSTILN----EYDAVTMQIREN 1172
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,128,083
Number of Sequences: 369166
Number of extensions: 1921727
Number of successful extensions: 6116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6113
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)