Planaria EST Database


DrC_02508

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02508
         (558 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q867X0|PME3_CAEEL  Poly(ADP-ribose) glycohydrolase pme-3 ...    39   0.007
sp|Q9H8G2|CI082_HUMAN  Protein C9orf82                             37   0.033
sp|Q96A49|SYAP1_HUMAN  Synapse associated protein 1                37   0.043
sp|P39723|YAE7_YEAST  Hypothetical 72.1 kDa protein in ACS1-...    37   0.043
sp|O59755|CUT12_SCHPO  Spindle pole body associated protein ...    36   0.073
sp|Q9D5V6|SYAP1_MOUSE  Synapse associated protein 1                35   0.13 
sp|Q97FK1|SBCC_CLOAB  Nuclease sbcCD subunit C                     35   0.13 
sp|P47083|MPP10_YEAST  U3 small nucleolar ribonucleoprotein ...    35   0.16 
sp|P15577|NU2M_PARTE  NADH-ubiquinone oxidoreductase chain 2...    35   0.16 
sp|Q00799|RBP2_PLAVB  Reticulocyte binding protein 2 precurs...    35   0.16 
>sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 (Poly ADP-ribose metabolism
           enzyme-3)
          Length = 781

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 3/164 (1%)
 Frame = +3

Query: 3   DEAKVDSCGDKKTEKSLSDDGFEYLKADDINPISGMDQNSEELNPVLDNDSLNKTIEDDS 182
           DE++ DS  + +  K +S++     +   I+ I  +D  +E     LDN    + +E+D 
Sbjct: 68  DESQEDSAENPEIAKEVSENCENLTETLKISNIESLDNVTERSEHTLDNHKSTEPMEED- 126

Query: 183 FVHEKLKLDSSFNT-LNESPNNEDVNNLIGDDEIPQYSILPEKLELETPEG--NDDAYEC 353
            V+ K  +D + N+  ++    E+ N  + D E  Q  +  +  EL    G   D   + 
Sbjct: 127 -VNNKSNIDVAINSDEDDELVLEENNKEMRDGEQVQQDLFADDQELIEYPGIMKDTTTQL 185

Query: 354 DLQDIIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNREIE 485
           D+ D   E+   M   E+       V E   N+      + E++
Sbjct: 186 DITDSEVETAQKMEMIEETEADSTFVGEDSKNQRQSGTTSDEVD 229
>sp|Q9H8G2|CI082_HUMAN Protein C9orf82
          Length = 361

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 8/183 (4%)
 Frame = +3

Query: 27  GDKKTEKSLSDDGFEYLKADDINPISGMDQNSEELNPVLDNDSLNKTIEDDSFVHEKLKL 206
           G+KK +K L D     LK   I  I  + Q   EL   L    + K +E D+ +   ++ 
Sbjct: 155 GEKKLQKMLPD----VLKNCSIEEIKKLCQEQLEL---LSEKKILKILEGDNGMDSDMEE 207

Query: 207 DSSFNTLNESPNNEDVNNLIGDDEIPQYSILPEKLELETPEGND--------DAYECDLQ 362
           ++   +   S      +  I      + +  PE LEL+  +G D        DAY+ D+ 
Sbjct: 208 EADDGSKMGSDLVSQQDICIDSASSVRENKQPEGLELKQGKGEDSDVLSINADAYDSDI- 266

Query: 363 DIIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNREIEKKVEEITNDEHDKVNEPHI 542
               E   N      E     V SE  A +  +  L ++IEK V EI        NEP  
Sbjct: 267 ----EGPCNEEAAAPEAPENTVQSE--AGQIDD--LEKDIEKSVNEILGLAESSPNEPKA 318

Query: 543 DTI 551
            T+
Sbjct: 319 ATL 321
>sp|Q96A49|SYAP1_HUMAN Synapse associated protein 1
          Length = 352

 Score = 36.6 bits (83), Expect = 0.043
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
 Frame = +3

Query: 366 IIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNRE-IEKKVEEITNDE 515
           ++ +S+   +E E+E  + P VSEFV++ F   NLN+E + K++E++  D+
Sbjct: 251 VVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEMEQLVLDK 301
>sp|P39723|YAE7_YEAST Hypothetical 72.1 kDa protein in ACS1-GCV3 intergenic region
          Length = 622

 Score = 36.6 bits (83), Expect = 0.043
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
 Frame = +3

Query: 117 NSEELNPVLDNDSLNKTIEDDSFVHEKLKLDSSFNTLNESPNNEDVNNLIGDDEIPQYSI 296
           +++ + P L NDS      +    + K+K+   +  +   PN +     +G+D   + SI
Sbjct: 49  HNDPIKPALMNDSNKVKNLEKELTNAKIKIQVLYEYIRRIPNKDGNAPSLGNDTDFRNSI 108

Query: 297 LPEKLELETPEGNDD--AYECDLQDIIAESEANMREFEKEPISEPVVSEFVANEFSEFNL 470
           + E L LE  +   D  A E + QD +   + N+   E    +   +  F+   F+E + 
Sbjct: 109 I-EGLNLEINKLKQDLKAKEVEYQDTLQFVQENLENSESIVNTINHLLSFILTHFNEQDE 167

Query: 471 NREIEKKVEEITNDEHDKVNEPHI 542
           N  +  K E  T +E  +++  ++
Sbjct: 168 NAHLLDKEERETLEETLELSSDYV 191
>sp|O59755|CUT12_SCHPO Spindle pole body associated protein cut12 (Cell untimely torn
           protein 12)
          Length = 548

 Score = 35.8 bits (81), Expect = 0.073
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
 Frame = +3

Query: 18  DSCGDKKTEKSLSDDGFEYLKADDINPISGMDQNSEELNPVLDNDSLNKTIEDDSFVHEK 197
           D   D  T    + + F + + DD NP+ G ++    L       ++N    ++   H++
Sbjct: 89  DISKDAATWNRPTKNNFLFTRLDDENPLMGHEEFKSPLLQSTPKPNINNPDNENKSKHDE 148

Query: 198 LKLDSSFN-TLNESPNNEDVNNLIGDDEIPQYSILPEKLELETPE-----GNDDAYECDL 359
              D+ +N  +NES  NE  +N    +++P     P  ++ E  +      N++ +   +
Sbjct: 149 F--DNRYNININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISKFKWDSNNNNDWSSLM 206

Query: 360 QDIIAESEANMREFEKEPISEPVV 431
           +D   +   N R+  KE I + ++
Sbjct: 207 KDCFRDVVNNNRKM-KEIIKDVMI 229
>sp|Q9D5V6|SYAP1_MOUSE Synapse associated protein 1
          Length = 365

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
 Frame = +3

Query: 366 IIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNRE----------IEKKVEEITNDE 515
           ++ +S+   +E E+E  + P VSEFV++ F   +LN+E          ++KK EE T  E
Sbjct: 265 VVIKSQLKSQEDEEEISTSPGVSEFVSDAFDTCSLNQEDLRKEMEQLVLDKKQEEATALE 324

Query: 516 HDKVN 530
            D  +
Sbjct: 325 EDSTD 329
>sp|Q97FK1|SBCC_CLOAB Nuclease sbcCD subunit C
          Length = 1163

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
 Frame = +3

Query: 123 EELNPVLDNDSLNKTIEDDSFVHEKLKLDSSFNTLNESPNNEDVNNLIGDDEIPQYSILP 302
           EE N    N+S+N   E+   V  +  ++  FN L E  N  ++  +  DD I   S   
Sbjct: 628 EEKNIKKLNESINNLGEEFKEVSLE-SMEKKFNYLKEKVNKFNLEKIQLDDNIKDLSERS 686

Query: 303 EKLELETPEGNDDAYECD--LQDIIAESEANMREFEKEPIS-EPVVSEFVANEFSEFNLN 473
            K+E+E  +      +C+  + D+ +E E  ++EF +   + E + +E    +F +F + 
Sbjct: 687 NKIEVEYQKEKTVEKQCEKRIVDLKSELEEAIKEFNEVAYTIENLKAELKIQDF-KFEMK 745

Query: 474 REIEKK 491
             +EK+
Sbjct: 746 EILEKE 751
>sp|P47083|MPP10_YEAST U3 small nucleolar ribonucleoprotein protein MPP10
          Length = 593

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
 Frame = +3

Query: 108 MDQNSEELNPVLDNDSLNKTIEDDSFVHEKLKLDSSFNTLNESPNNEDVNNLIGDDEIPQ 287
           + +N EE  P +D++  +     + F  EK ++ S  +  + SP+   +N+   D E   
Sbjct: 138 LSENDEE--PSMDDEKTSAEAAREEFAEEK-RISSGQDERHSSPDPYGINDKFFDLEKFN 194

Query: 288 YSILPEKLELETPEGNDDAYECDLQDIIAESEAN----MREFEKEPISEPVVSEFVANEF 455
              L  +   E  EG++D      QD+ ++ E        +F  +P  EPV       + 
Sbjct: 195 RDTLAAEDSNEASEGSEDEDIDYFQDMPSDDEEEEAIYYEDFFDKPTKEPVKKHSDVKD- 253

Query: 456 SEFNLNREIEKKVEEITNDEHD 521
                     K+ EE+  +EHD
Sbjct: 254 ---------PKEDEELDEEEHD 266
>sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 193

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 24/79 (30%), Positives = 40/79 (50%)
 Frame = -2

Query: 533 FVNFIMFIISYFLNFFLYLSIQIKFRKFISNKFGYYWLRNGFFFKFPHISFRFCNNILKV 354
           F+N  +++++  L FF   ++++   K +S     Y+  N FFFKF  + F F N     
Sbjct: 41  FLNLALYLLALALFFFFLFNVKVALLKSVSQ---IYYFNNIFFFKFFVLIF-FLNLAGIP 96

Query: 353 TFIGIVITFRSFQF*LFWK 297
             +G  + F  F F LF+K
Sbjct: 97  PLLGFFLKFLIFFF-LFFK 114
>sp|Q00799|RBP2_PLAVB Reticulocyte binding protein 2 precursor (PvRBP-2)
          Length = 2867

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 26/202 (12%)
 Frame = +3

Query: 6    EAKVDSCGDKKTEKSLSDDGFEYL------KADDINPISGMDQNSEELNPVLDN-----D 152
            E K++    KK +K + + G E++      K    +  S    NS+E    L       +
Sbjct: 558  ETKIEEI--KKKKKDILERGKEFINIMNEIKKKKKSNSSNSSTNSKEFTDKLKELETEFE 615

Query: 153  SLNKTIEDDSFVHEKLKL----DSSFNTLNE------SPNNEDVNNLIG-DDEIPQYSIL 299
             LNKT++      E +K+    D S     E      S N ++V  LI  +DEI +Y   
Sbjct: 616  GLNKTVKGYLQEIEDIKVKENEDRSLKNQIEQHLKYTSDNRDNVKTLISKNDEIQKYIEK 675

Query: 300  PEKLELETPEGNDDAYECDLQDIIAESEANMREFEKEPISEPV--VSEFVANEFSEFNLN 473
             EKL  + P G  D +  +  ++  + +  + EF KE +   +  +S+F       +N  
Sbjct: 676  IEKLINDAPSGK-DKFTTEKTNLQNKVKKIIDEFHKEDLQLLLNSLSKFYEEHQKLYNEA 734

Query: 474  REIE--KKVEEITNDEHDKVNE 533
              IE  K + + T +E++K+ +
Sbjct: 735  STIEKIKDLHQKTKEEYEKLEK 756
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,968,050
Number of Sequences: 369166
Number of extensions: 1096403
Number of successful extensions: 4515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4498
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)