Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E04
(558 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 ... 39 0.007
sp|Q9H8G2|CI082_HUMAN Protein C9orf82 37 0.033
sp|Q96A49|SYAP1_HUMAN Synapse associated protein 1 37 0.043
sp|P39723|YAE7_YEAST Hypothetical 72.1 kDa protein in ACS1-... 37 0.043
sp|O59755|CUT12_SCHPO Spindle pole body associated protein ... 36 0.073
sp|Q9D5V6|SYAP1_MOUSE Synapse associated protein 1 35 0.13
sp|Q97FK1|SBCC_CLOAB Nuclease sbcCD subunit C 35 0.13
sp|P47083|MPP10_YEAST U3 small nucleolar ribonucleoprotein ... 35 0.16
sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2... 35 0.16
sp|Q00799|RBP2_PLAVB Reticulocyte binding protein 2 precurs... 35 0.16
>sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 (Poly ADP-ribose metabolism
enzyme-3)
Length = 781
Score = 39.3 bits (90), Expect = 0.007
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 3/164 (1%)
Frame = +3
Query: 3 DEAKVDSCGDKKTEKSLSDDGFEYLKADDINPISGMDQNSEELNPVLDNDSLNKTIEDDS 182
DE++ DS + + K +S++ + I+ I +D +E LDN + +E+D
Sbjct: 68 DESQEDSAENPEIAKEVSENCENLTETLKISNIESLDNVTERSEHTLDNHKSTEPMEED- 126
Query: 183 FVHEKLKLDSSFNT-LNESPNNEDVNNLIGDDEIPQYSILPEKLELETPEG--NDDAYEC 353
V+ K +D + N+ ++ E+ N + D E Q + + EL G D +
Sbjct: 127 -VNNKSNIDVAINSDEDDELVLEENNKEMRDGEQVQQDLFADDQELIEYPGIMKDTTTQL 185
Query: 354 DLQDIIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNREIE 485
D+ D E+ M E+ V E N+ + E++
Sbjct: 186 DITDSEVETAQKMEMIEETEADSTFVGEDSKNQRQSGTTSDEVD 229
>sp|Q9H8G2|CI082_HUMAN Protein C9orf82
Length = 361
Score = 37.0 bits (84), Expect = 0.033
Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 8/183 (4%)
Frame = +3
Query: 27 GDKKTEKSLSDDGFEYLKADDINPISGMDQNSEELNPVLDNDSLNKTIEDDSFVHEKLKL 206
G+KK +K L D LK I I + Q EL L + K +E D+ + ++
Sbjct: 155 GEKKLQKMLPD----VLKNCSIEEIKKLCQEQLEL---LSEKKILKILEGDNGMDSDMEE 207
Query: 207 DSSFNTLNESPNNEDVNNLIGDDEIPQYSILPEKLELETPEGND--------DAYECDLQ 362
++ + S + I + + PE LEL+ +G D DAY+ D+
Sbjct: 208 EADDGSKMGSDLVSQQDICIDSASSVRENKQPEGLELKQGKGEDSDVLSINADAYDSDI- 266
Query: 363 DIIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNREIEKKVEEITNDEHDKVNEPHI 542
E N E V SE A + + L ++IEK V EI NEP
Sbjct: 267 ----EGPCNEEAAAPEAPENTVQSE--AGQIDD--LEKDIEKSVNEILGLAESSPNEPKA 318
Query: 543 DTI 551
T+
Sbjct: 319 ATL 321
>sp|Q96A49|SYAP1_HUMAN Synapse associated protein 1
Length = 352
Score = 36.6 bits (83), Expect = 0.043
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +3
Query: 366 IIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNRE-IEKKVEEITNDE 515
++ +S+ +E E+E + P VSEFV++ F NLN+E + K++E++ D+
Sbjct: 251 VVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEMEQLVLDK 301
>sp|P39723|YAE7_YEAST Hypothetical 72.1 kDa protein in ACS1-GCV3 intergenic region
Length = 622
Score = 36.6 bits (83), Expect = 0.043
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = +3
Query: 117 NSEELNPVLDNDSLNKTIEDDSFVHEKLKLDSSFNTLNESPNNEDVNNLIGDDEIPQYSI 296
+++ + P L NDS + + K+K+ + + PN + +G+D + SI
Sbjct: 49 HNDPIKPALMNDSNKVKNLEKELTNAKIKIQVLYEYIRRIPNKDGNAPSLGNDTDFRNSI 108
Query: 297 LPEKLELETPEGNDD--AYECDLQDIIAESEANMREFEKEPISEPVVSEFVANEFSEFNL 470
+ E L LE + D A E + QD + + N+ E + + F+ F+E +
Sbjct: 109 I-EGLNLEINKLKQDLKAKEVEYQDTLQFVQENLENSESIVNTINHLLSFILTHFNEQDE 167
Query: 471 NREIEKKVEEITNDEHDKVNEPHI 542
N + K E T +E +++ ++
Sbjct: 168 NAHLLDKEERETLEETLELSSDYV 191
>sp|O59755|CUT12_SCHPO Spindle pole body associated protein cut12 (Cell untimely torn
protein 12)
Length = 548
Score = 35.8 bits (81), Expect = 0.073
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Frame = +3
Query: 18 DSCGDKKTEKSLSDDGFEYLKADDINPISGMDQNSEELNPVLDNDSLNKTIEDDSFVHEK 197
D D T + + F + + DD NP+ G ++ L ++N ++ H++
Sbjct: 89 DISKDAATWNRPTKNNFLFTRLDDENPLMGHEEFKSPLLQSTPKPNINNPDNENKSKHDE 148
Query: 198 LKLDSSFN-TLNESPNNEDVNNLIGDDEIPQYSILPEKLELETPE-----GNDDAYECDL 359
D+ +N +NES NE +N +++P P ++ E + N++ + +
Sbjct: 149 F--DNRYNININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISKFKWDSNNNNDWSSLM 206
Query: 360 QDIIAESEANMREFEKEPISEPVV 431
+D + N R+ KE I + ++
Sbjct: 207 KDCFRDVVNNNRKM-KEIIKDVMI 229
>sp|Q9D5V6|SYAP1_MOUSE Synapse associated protein 1
Length = 365
Score = 35.0 bits (79), Expect = 0.13
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Frame = +3
Query: 366 IIAESEANMREFEKEPISEPVVSEFVANEFSEFNLNRE----------IEKKVEEITNDE 515
++ +S+ +E E+E + P VSEFV++ F +LN+E ++KK EE T E
Sbjct: 265 VVIKSQLKSQEDEEEISTSPGVSEFVSDAFDTCSLNQEDLRKEMEQLVLDKKQEEATALE 324
Query: 516 HDKVN 530
D +
Sbjct: 325 EDSTD 329
>sp|Q97FK1|SBCC_CLOAB Nuclease sbcCD subunit C
Length = 1163
Score = 35.0 bits (79), Expect = 0.13
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Frame = +3
Query: 123 EELNPVLDNDSLNKTIEDDSFVHEKLKLDSSFNTLNESPNNEDVNNLIGDDEIPQYSILP 302
EE N N+S+N E+ V + ++ FN L E N ++ + DD I S
Sbjct: 628 EEKNIKKLNESINNLGEEFKEVSLE-SMEKKFNYLKEKVNKFNLEKIQLDDNIKDLSERS 686
Query: 303 EKLELETPEGNDDAYECD--LQDIIAESEANMREFEKEPIS-EPVVSEFVANEFSEFNLN 473
K+E+E + +C+ + D+ +E E ++EF + + E + +E +F +F +
Sbjct: 687 NKIEVEYQKEKTVEKQCEKRIVDLKSELEEAIKEFNEVAYTIENLKAELKIQDF-KFEMK 745
Query: 474 REIEKK 491
+EK+
Sbjct: 746 EILEKE 751
>sp|P47083|MPP10_YEAST U3 small nucleolar ribonucleoprotein protein MPP10
Length = 593
Score = 34.7 bits (78), Expect = 0.16
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Frame = +3
Query: 108 MDQNSEELNPVLDNDSLNKTIEDDSFVHEKLKLDSSFNTLNESPNNEDVNNLIGDDEIPQ 287
+ +N EE P +D++ + + F EK ++ S + + SP+ +N+ D E
Sbjct: 138 LSENDEE--PSMDDEKTSAEAAREEFAEEK-RISSGQDERHSSPDPYGINDKFFDLEKFN 194
Query: 288 YSILPEKLELETPEGNDDAYECDLQDIIAESEAN----MREFEKEPISEPVVSEFVANEF 455
L + E EG++D QD+ ++ E +F +P EPV +
Sbjct: 195 RDTLAAEDSNEASEGSEDEDIDYFQDMPSDDEEEEAIYYEDFFDKPTKEPVKKHSDVKD- 253
Query: 456 SEFNLNREIEKKVEEITNDEHD 521
K+ EE+ +EHD
Sbjct: 254 ---------PKEDEELDEEEHD 266
>sp|P15577|NU2M_PARTE NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 193
Score = 34.7 bits (78), Expect = 0.16
Identities = 24/79 (30%), Positives = 40/79 (50%)
Frame = -2
Query: 533 FVNFIMFIISYFLNFFLYLSIQIKFRKFISNKFGYYWLRNGFFFKFPHISFRFCNNILKV 354
F+N +++++ L FF ++++ K +S Y+ N FFFKF + F F N
Sbjct: 41 FLNLALYLLALALFFFFLFNVKVALLKSVSQ---IYYFNNIFFFKFFVLIF-FLNLAGIP 96
Query: 353 TFIGIVITFRSFQF*LFWK 297
+G + F F F LF+K
Sbjct: 97 PLLGFFLKFLIFFF-LFFK 114
>sp|Q00799|RBP2_PLAVB Reticulocyte binding protein 2 precursor (PvRBP-2)
Length = 2867
Score = 34.7 bits (78), Expect = 0.16
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 26/202 (12%)
Frame = +3
Query: 6 EAKVDSCGDKKTEKSLSDDGFEYL------KADDINPISGMDQNSEELNPVLDN-----D 152
E K++ KK +K + + G E++ K + S NS+E L +
Sbjct: 558 ETKIEEI--KKKKKDILERGKEFINIMNEIKKKKKSNSSNSSTNSKEFTDKLKELETEFE 615
Query: 153 SLNKTIEDDSFVHEKLKL----DSSFNTLNE------SPNNEDVNNLIG-DDEIPQYSIL 299
LNKT++ E +K+ D S E S N ++V LI +DEI +Y
Sbjct: 616 GLNKTVKGYLQEIEDIKVKENEDRSLKNQIEQHLKYTSDNRDNVKTLISKNDEIQKYIEK 675
Query: 300 PEKLELETPEGNDDAYECDLQDIIAESEANMREFEKEPISEPV--VSEFVANEFSEFNLN 473
EKL + P G D + + ++ + + + EF KE + + +S+F +N
Sbjct: 676 IEKLINDAPSGK-DKFTTEKTNLQNKVKKIIDEFHKEDLQLLLNSLSKFYEEHQKLYNEA 734
Query: 474 REIE--KKVEEITNDEHDKVNE 533
IE K + + T +E++K+ +
Sbjct: 735 STIEKIKDLHQKTKEEYEKLEK 756
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,968,050
Number of Sequences: 369166
Number of extensions: 1096403
Number of successful extensions: 4515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4498
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)