Planaria EST Database


DrC_02507

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02507
         (587 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15578|NU2M_PODAN  NADH-ubiquinone oxidoreductase chain 2...    29   7.6  
sp|P43779|TFOX_HAEIN  DNA transformation protein tfoX (Compe...    29   9.9  
sp|Q9M3J5|YCF1_SPIOL  Hypothetical 56.9 kDa protein ycf1           29   9.9  
>sp|P15578|NU2M_PODAN NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 556

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +3

Query: 456 FFYLPTHSINRLINFFLF 509
           FFYLP HSIN  I  FLF
Sbjct: 482 FFYLPDHSINPSIGEFLF 499
>sp|P43779|TFOX_HAEIN DNA transformation protein tfoX (Competence activator) (Protein
           sxy)
          Length = 217

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 145 ESFTTNSLNRLFLQCQMYDLSD 80
           E FTTN LN+ F+  Q Y LSD
Sbjct: 67  EPFTTNELNKRFVLSQYYALSD 88
>sp|Q9M3J5|YCF1_SPIOL Hypothetical 56.9 kDa protein ycf1
          Length = 481

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
 Frame = +3

Query: 429 ILCVFL*------YSFFYLPTHSINRLINFFLFMC 515
           I CVFL       +++F LP+  + RL+N ++F C
Sbjct: 129 IQCVFLNNLIFQLFNYFILPSSMLARLVNIYMFRC 163
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,414,595
Number of Sequences: 369166
Number of extensions: 1013828
Number of successful extensions: 2083
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)