Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E01
(587 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15578|NU2M_PODAN NADH-ubiquinone oxidoreductase chain 2... 29 7.6
sp|P43779|TFOX_HAEIN DNA transformation protein tfoX (Compe... 29 9.9
sp|Q9M3J5|YCF1_SPIOL Hypothetical 56.9 kDa protein ycf1 29 9.9
>sp|P15578|NU2M_PODAN NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 556
Score = 29.3 bits (64), Expect = 7.6
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +3
Query: 456 FFYLPTHSINRLINFFLF 509
FFYLP HSIN I FLF
Sbjct: 482 FFYLPDHSINPSIGEFLF 499
>sp|P43779|TFOX_HAEIN DNA transformation protein tfoX (Competence activator) (Protein
sxy)
Length = 217
Score = 28.9 bits (63), Expect = 9.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 145 ESFTTNSLNRLFLQCQMYDLSD 80
E FTTN LN+ F+ Q Y LSD
Sbjct: 67 EPFTTNELNKRFVLSQYYALSD 88
>sp|Q9M3J5|YCF1_SPIOL Hypothetical 56.9 kDa protein ycf1
Length = 481
Score = 28.9 bits (63), Expect = 9.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Frame = +3
Query: 429 ILCVFL*------YSFFYLPTHSINRLINFFLFMC 515
I CVFL +++F LP+ + RL+N ++F C
Sbjct: 129 IQCVFLNNLIFQLFNYFILPSSMLARLVNIYMFRC 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,414,595
Number of Sequences: 369166
Number of extensions: 1013828
Number of successful extensions: 2083
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)