Planaria EST Database


DrC_02506

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02506
         (791 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41997|YKC6_CAEEL  Hypothetical protein B0280.6 in chromo...    89   1e-17
sp|Q8K3W2|LRC10_MOUSE  Leucine-rich repeat-containing protei...    35   0.23 
sp|Q5BKY1|LRC10_HUMAN  Leucine-rich repeat-containing protei...    34   0.40 
sp|P52364|UL88_HHV7J  Protein U59                                  34   0.40 
sp|Q58454|YA54_METJA  Hypothetical protein MJ1054 [Contains:...    34   0.52 
sp|P13364|GYRB_PSEPU  DNA gyrase subunit B                         33   0.68 
sp|O30279|YN92_ARCFU  Hypothetical protein AF2392                  33   0.68 
sp|P34257|TC3A_CAEEL  Transposable element Tc3 transposase         33   1.2  
sp|Q04202|TCB2_CAEBR  Transposable element Tcb2 transposase        32   2.6  
sp|Q10488|ETR1_SCHPO  Probable trans-2-enoyl-CoA reductase, ...    31   4.4  
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
          Length = 252

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 40/98 (40%), Positives = 61/98 (62%)
 Frame = -2

Query: 385 LLHDNARTHVSKQVKETLDDFSWDVLPHPPYSPDIAPSDYYLFRSMPHCLSEQRFKNFED 206
           L+  + + HV+K+  + L D  W VLPHPPYSPD+AP+DY+LF S+   + +++F + E 
Sbjct: 152 LVTGDEKPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH 211

Query: 205 VKFWIDEWIISKHEQFFFDAIHKLPDKWALVVDSDGNY 92
           +K  +  +  S+   FF   I  LP KW  VVD++G Y
Sbjct: 212 LKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNGEY 249

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -2

Query: 778 KEGKWIPYELNERNKEKRKTTCGILFEKHRRKSFLHRIVTGDEK 647
           K G W+P+EL+   K  R   C  L    R+  +L+ +VTGDEK
Sbjct: 115 KLGIWVPHELSASQKLTRVNVCTQLLTFRRKFDWLNNLVTGDEK 158
>sp|Q8K3W2|LRC10_MOUSE Leucine-rich repeat-containing protein 10 (Heart-restricted
           leucine-rich repeat protein)
          Length = 274

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = -3

Query: 639 ISRIQNVENLGATQVNRHHRLQNAIFTGRKHCCVYSGIRRMCCIMNSCSLVRRLLVIVIS 460
           ++++QN++ L A   N    L   + T ++ C +Y G  ++C + +  SL++ L  + + 
Sbjct: 71  LAQLQNLQIL-ALDFNNFKALPRVVCTLKQLCILYLGNNKLCDLPDELSLLQNLRTLWLE 129

Query: 459 NNCL 448
           +NCL
Sbjct: 130 SNCL 133
>sp|Q5BKY1|LRC10_HUMAN Leucine-rich repeat-containing protein 10
          Length = 277

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = -3

Query: 639 ISRIQNVENLGATQVNRHHRLQNAIFTGRKHCCVYSGIRRMCCIMNSCSLVRRLLVIVIS 460
           + ++QN++ L A   N    L   + T ++ C +Y G  ++C + +  SL++ L  + I 
Sbjct: 71  LGQLQNLQIL-ALDFNNFKALPQVVCTLKQLCILYLGNNKLCDLPSELSLLQNLRTLWIE 129

Query: 459 NNCL 448
            NCL
Sbjct: 130 ANCL 133
>sp|P52364|UL88_HHV7J Protein U59
          Length = 347

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
 Frame = -3

Query: 738 TKKSEKQLVESCSKSTEENRFCIVSSLGTKNESISRIQNVENLGAT--------QVNRHH 583
           T KSE  +V++C K  E  R+ + +    +N  +     +  LGA         ++ +  
Sbjct: 178 TSKSENDIVKTCKKLAESQRYTLTNGTVLQNFILVH-ACLFKLGAVNFWEEMNGKLRQRP 236

Query: 582 RLQNAIFTGRKHC---CVYSGIRRMCCIMNSCSLVRRLLVIVISN 457
            L +  FTG + C   C Y     +C ++NS    + LL  ++ N
Sbjct: 237 ELMSKSFTGHEECFYNCYY-----LCTLLNSIYSYKTLLPEIVDN 276
>sp|Q58454|YA54_METJA Hypothetical protein MJ1054 [Contains: Mja UDPGD intein]
          Length = 895

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
 Frame = -2

Query: 406 KRDGKVILLHDNARTHVSKQVKETLDDFSWDVLPHPPYSPD-IAPSDYY----------- 263
           K D KVI++        +++VKE L D++ DV+ +P +  + IA  D++           
Sbjct: 110 KEDYKVIVIKSTVPVGTNRRVKELLKDYNVDVVSNPEFLREGIAVYDFFNPERVILGFEN 169

Query: 262 LFRSMPHCLSEQRFKNFED--VKFWIDEW 182
           L    P  + E+ +K F+D  + F I  W
Sbjct: 170 LNNKKPIEIMEEVYKYFKDKNIPFVITNW 198
>sp|P13364|GYRB_PSEPU DNA gyrase subunit B
          Length = 806

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
 Frame = +3

Query: 678 NDFLLCFSNKIPQ-------VVFRFSLFRSFNSY 758
           N+ LLCF+N IPQ       V FR SL RS NSY
Sbjct: 265 NENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSY 298
>sp|O30279|YN92_ARCFU Hypothetical protein AF2392
          Length = 86

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 328 DFSWDVLPHPPYSPDIAPSDYYLFRSMPHCLSEQRFKNFEDVKFWIDE 185
           D  WD  P+PPY P + P D      M   + E      ED+K  I+E
Sbjct: 35  DHPWDYPPYPPYPPALRPEDEL---EMLEAMKEDLEAELEDIKKRIEE 79
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
          Length = 329

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
 Frame = -2

Query: 703 FEKHRRKSFLHRIVTGDEK*IYFKNPKR-RKSWCDSGQPSSSIAKRNIHGKKALLCI*WD 527
           F K+   +   ++V  DEK      P   R  W D  +     ++RN  G   ++   + 
Sbjct: 128 FAKNNMGTNWSKVVFSDEKKFNLDGPDGCRYYWRDLRKEPMVFSRRNFGGGTVMVWGAFT 187

Query: 526 QKNVLYYELLQPGQTITGDCYQQQLLMLRDELQEKRPEWAKRDGKVILLHDNARTHVSKQ 347
           +K  L  + +      T   YQ  L +   EL +    ++++D +     DNA  HVS  
Sbjct: 188 EKKKLEIQFVSSKMNSTD--YQNVLEL---ELSKYLRHYSRKDFR--FQQDNATIHVSNS 240

Query: 346 VKETLDDFSWDVLPHPPYSPDIAP 275
            ++       ++L  P  SPD+ P
Sbjct: 241 TRDYFKLKKINLLDWPARSPDLNP 264
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
          Length = 273

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
 Frame = -2

Query: 439 DELQEKRPEWAKRD-GKVILLH-DNARTHVSKQVKETLDDFSWDVLPHPPYSPDIAPSDY 266
           D L+     WA+   G+  +   DN   H SK +KE       D+L  P  SPD+ P ++
Sbjct: 154 DILENTMRPWARSTVGRAFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNPIEH 213

Query: 265 YL------FRSMPHCLSEQRFKNFEDVKFWIDEWIISKHEQFFFDAIHKLPDKWALVVDS 104
                    R +    + Q+F   +DV   I   +I          +  +P +   V+D+
Sbjct: 214 LWEHVERHVRGVRASNANQKFDQLQDVWQAIPMSVID-------TILDSMPRRCQTVIDA 266

Query: 103 DG 98
            G
Sbjct: 267 KG 268
>sp|Q10488|ETR1_SCHPO Probable trans-2-enoyl-CoA reductase, mitochondrial precursor
          Length = 372

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 28/108 (25%), Positives = 48/108 (44%)
 Frame = -2

Query: 451 LMLRDELQEKRPEWAKRDGKVILLHDNARTHVSKQVKETLDDFSWDVLPHPPYSPDIAPS 272
           LM R  +++K PEW +  G+V L  D     V+ ++ + +                +A  
Sbjct: 232 LMDRKTMKQKVPEWIQ-GGEVKLGIDCVSGRVAAEMAKYMSK-----------GATMATF 279

Query: 271 DYYLFRSMPHCLSEQRFKNFEDVKFWIDEWIISKHEQFFFDAIHKLPD 128
                + +P  +S   FKN +   FW+ +W  S+H + F   IHK+ D
Sbjct: 280 GGMSRQPLPVPVSLLIFKNLKFHGFWVTKW-KSEHPEEFLKIIHKVED 326
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,476,201
Number of Sequences: 369166
Number of extensions: 1938930
Number of successful extensions: 5703
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5693
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)