Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D19
(791 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 89 1e-17
sp|Q8K3W2|LRC10_MOUSE Leucine-rich repeat-containing protei... 35 0.23
sp|Q5BKY1|LRC10_HUMAN Leucine-rich repeat-containing protei... 34 0.40
sp|P52364|UL88_HHV7J Protein U59 34 0.40
sp|Q58454|YA54_METJA Hypothetical protein MJ1054 [Contains:... 34 0.52
sp|P13364|GYRB_PSEPU DNA gyrase subunit B 33 0.68
sp|O30279|YN92_ARCFU Hypothetical protein AF2392 33 0.68
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 33 1.2
sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase 32 2.6
sp|Q10488|ETR1_SCHPO Probable trans-2-enoyl-CoA reductase, ... 31 4.4
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 89.0 bits (219), Expect = 1e-17
Identities = 40/98 (40%), Positives = 61/98 (62%)
Frame = -2
Query: 385 LLHDNARTHVSKQVKETLDDFSWDVLPHPPYSPDIAPSDYYLFRSMPHCLSEQRFKNFED 206
L+ + + HV+K+ + L D W VLPHPPYSPD+AP+DY+LF S+ + +++F + E
Sbjct: 152 LVTGDEKPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH 211
Query: 205 VKFWIDEWIISKHEQFFFDAIHKLPDKWALVVDSDGNY 92
+K + + S+ FF I LP KW VVD++G Y
Sbjct: 212 LKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNGEY 249
Score = 38.1 bits (87), Expect = 0.028
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -2
Query: 778 KEGKWIPYELNERNKEKRKTTCGILFEKHRRKSFLHRIVTGDEK 647
K G W+P+EL+ K R C L R+ +L+ +VTGDEK
Sbjct: 115 KLGIWVPHELSASQKLTRVNVCTQLLTFRRKFDWLNNLVTGDEK 158
>sp|Q8K3W2|LRC10_MOUSE Leucine-rich repeat-containing protein 10 (Heart-restricted
leucine-rich repeat protein)
Length = 274
Score = 35.0 bits (79), Expect = 0.23
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = -3
Query: 639 ISRIQNVENLGATQVNRHHRLQNAIFTGRKHCCVYSGIRRMCCIMNSCSLVRRLLVIVIS 460
++++QN++ L A N L + T ++ C +Y G ++C + + SL++ L + +
Sbjct: 71 LAQLQNLQIL-ALDFNNFKALPRVVCTLKQLCILYLGNNKLCDLPDELSLLQNLRTLWLE 129
Query: 459 NNCL 448
+NCL
Sbjct: 130 SNCL 133
>sp|Q5BKY1|LRC10_HUMAN Leucine-rich repeat-containing protein 10
Length = 277
Score = 34.3 bits (77), Expect = 0.40
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = -3
Query: 639 ISRIQNVENLGATQVNRHHRLQNAIFTGRKHCCVYSGIRRMCCIMNSCSLVRRLLVIVIS 460
+ ++QN++ L A N L + T ++ C +Y G ++C + + SL++ L + I
Sbjct: 71 LGQLQNLQIL-ALDFNNFKALPQVVCTLKQLCILYLGNNKLCDLPSELSLLQNLRTLWIE 129
Query: 459 NNCL 448
NCL
Sbjct: 130 ANCL 133
>sp|P52364|UL88_HHV7J Protein U59
Length = 347
Score = 34.3 bits (77), Expect = 0.40
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Frame = -3
Query: 738 TKKSEKQLVESCSKSTEENRFCIVSSLGTKNESISRIQNVENLGAT--------QVNRHH 583
T KSE +V++C K E R+ + + +N + + LGA ++ +
Sbjct: 178 TSKSENDIVKTCKKLAESQRYTLTNGTVLQNFILVH-ACLFKLGAVNFWEEMNGKLRQRP 236
Query: 582 RLQNAIFTGRKHC---CVYSGIRRMCCIMNSCSLVRRLLVIVISN 457
L + FTG + C C Y +C ++NS + LL ++ N
Sbjct: 237 ELMSKSFTGHEECFYNCYY-----LCTLLNSIYSYKTLLPEIVDN 276
>sp|Q58454|YA54_METJA Hypothetical protein MJ1054 [Contains: Mja UDPGD intein]
Length = 895
Score = 33.9 bits (76), Expect = 0.52
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Frame = -2
Query: 406 KRDGKVILLHDNARTHVSKQVKETLDDFSWDVLPHPPYSPD-IAPSDYY----------- 263
K D KVI++ +++VKE L D++ DV+ +P + + IA D++
Sbjct: 110 KEDYKVIVIKSTVPVGTNRRVKELLKDYNVDVVSNPEFLREGIAVYDFFNPERVILGFEN 169
Query: 262 LFRSMPHCLSEQRFKNFED--VKFWIDEW 182
L P + E+ +K F+D + F I W
Sbjct: 170 LNNKKPIEIMEEVYKYFKDKNIPFVITNW 198
>sp|P13364|GYRB_PSEPU DNA gyrase subunit B
Length = 806
Score = 33.5 bits (75), Expect = 0.68
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
Frame = +3
Query: 678 NDFLLCFSNKIPQ-------VVFRFSLFRSFNSY 758
N+ LLCF+N IPQ V FR SL RS NSY
Sbjct: 265 NENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSY 298
>sp|O30279|YN92_ARCFU Hypothetical protein AF2392
Length = 86
Score = 33.5 bits (75), Expect = 0.68
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 328 DFSWDVLPHPPYSPDIAPSDYYLFRSMPHCLSEQRFKNFEDVKFWIDE 185
D WD P+PPY P + P D M + E ED+K I+E
Sbjct: 35 DHPWDYPPYPPYPPALRPEDEL---EMLEAMKEDLEAELEDIKKRIEE 79
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 32.7 bits (73), Expect = 1.2
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Frame = -2
Query: 703 FEKHRRKSFLHRIVTGDEK*IYFKNPKR-RKSWCDSGQPSSSIAKRNIHGKKALLCI*WD 527
F K+ + ++V DEK P R W D + ++RN G ++ +
Sbjct: 128 FAKNNMGTNWSKVVFSDEKKFNLDGPDGCRYYWRDLRKEPMVFSRRNFGGGTVMVWGAFT 187
Query: 526 QKNVLYYELLQPGQTITGDCYQQQLLMLRDELQEKRPEWAKRDGKVILLHDNARTHVSKQ 347
+K L + + T YQ L + EL + ++++D + DNA HVS
Sbjct: 188 EKKKLEIQFVSSKMNSTD--YQNVLEL---ELSKYLRHYSRKDFR--FQQDNATIHVSNS 240
Query: 346 VKETLDDFSWDVLPHPPYSPDIAP 275
++ ++L P SPD+ P
Sbjct: 241 TRDYFKLKKINLLDWPARSPDLNP 264
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase
Length = 273
Score = 31.6 bits (70), Expect = 2.6
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Frame = -2
Query: 439 DELQEKRPEWAKRD-GKVILLH-DNARTHVSKQVKETLDDFSWDVLPHPPYSPDIAPSDY 266
D L+ WA+ G+ + DN H SK +KE D+L P SPD+ P ++
Sbjct: 154 DILENTMRPWARSTVGRAFVFQQDNDPKHTSKHIKEWFRRRHVDLLDWPSQSPDLNPIEH 213
Query: 265 YL------FRSMPHCLSEQRFKNFEDVKFWIDEWIISKHEQFFFDAIHKLPDKWALVVDS 104
R + + Q+F +DV I +I + +P + V+D+
Sbjct: 214 LWEHVERHVRGVRASNANQKFDQLQDVWQAIPMSVID-------TILDSMPRRCQTVIDA 266
Query: 103 DG 98
G
Sbjct: 267 KG 268
>sp|Q10488|ETR1_SCHPO Probable trans-2-enoyl-CoA reductase, mitochondrial precursor
Length = 372
Score = 30.8 bits (68), Expect = 4.4
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = -2
Query: 451 LMLRDELQEKRPEWAKRDGKVILLHDNARTHVSKQVKETLDDFSWDVLPHPPYSPDIAPS 272
LM R +++K PEW + G+V L D V+ ++ + + +A
Sbjct: 232 LMDRKTMKQKVPEWIQ-GGEVKLGIDCVSGRVAAEMAKYMSK-----------GATMATF 279
Query: 271 DYYLFRSMPHCLSEQRFKNFEDVKFWIDEWIISKHEQFFFDAIHKLPD 128
+ +P +S FKN + FW+ +W S+H + F IHK+ D
Sbjct: 280 GGMSRQPLPVPVSLLIFKNLKFHGFWVTKW-KSEHPEEFLKIIHKVED 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,476,201
Number of Sequences: 369166
Number of extensions: 1938930
Number of successful extensions: 5703
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5693
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)