Planaria EST Database


DrC_02501

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02501
         (308 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z172|SUMO3_MOUSE  Small ubiquitin-related modifier 3 pr...   108   5e-24
sp|P55854|SUMO3_HUMAN  Small ubiquitin-related modifier 3 pr...   106   1e-23
sp|P61956|SUMO2_HUMAN  Small ubiquitin-related modifier 2 pr...   106   1e-23
sp|Q6EEV6|SUMO4_HUMAN  Small ubiquitin-related modifier 4 pr...    93   2e-19
sp|P55852|SMT3_ARATH  Ubiquitin-like protein SMT3                  91   8e-19
sp|P63166|SUMO1_MOUSE  Small ubiquitin-related modifier 1 pr...    88   7e-18
sp|P55857|SMT3_ORYSA  Ubiquitin-like protein SMT3                  87   1e-17
sp|P55853|SMT3_CAEEL  Ubiquitin-like protein SMT3                  87   1e-17
sp|Q9MZD5|SUMO1_CERNI  Small ubiquitin-related modifier 1 pr...    86   3e-17
sp|O13351|PMT3_SCHPO  Ubiquitin-like protein pmt3/smt3             80   1e-15
>sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 precursor (SUMO-3)
           (Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
          Length = 110

 Score =  108 bits (269), Expect = 5e-24
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = +1

Query: 7   EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
           +HIN+KV GQDG+V+ FKIK++T L KLM AYC+R GL    +RF FDG  I ETDTP  
Sbjct: 15  DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 74

Query: 187 LDMEENDTIEVFQSQTGGS 243
           L+ME+ DTI+VFQ QTGGS
Sbjct: 75  LEMEDEDTIDVFQQQTGGS 93
>sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 precursor (SUMO-3)
           (Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
          Length = 103

 Score =  106 bits (265), Expect = 1e-23
 Identities = 49/78 (62%), Positives = 60/78 (76%)
 Frame = +1

Query: 7   EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
           +HIN+KV GQDG+V+ FKIK++T L KLM AYC+R GL    +RF FDG  I ETDTP  
Sbjct: 15  DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 74

Query: 187 LDMEENDTIEVFQSQTGG 240
           L+ME+ DTI+VFQ QTGG
Sbjct: 75  LEMEDEDTIDVFQQQTGG 92
>sp|P61956|SUMO2_HUMAN Small ubiquitin-related modifier 2 precursor (SUMO-2)
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2) (HSMT3)
 sp|P61957|SUMO2_MOUSE Small ubiquitin-related modifier 2 precursor (SUMO-2)
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2)
 sp|P61959|SUMO2_RAT Small ubiquitin-related modifier 2 precursor (SUMO-2)
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2)
 sp|P61958|SUMO2_PIG Small ubiquitin-related modifier 2 precursor (SUMO-2)
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2) (MIF2 suppressor)
 sp|Q6LDZ8|SUMO2_CRIGR Small ubiquitin-related modifier 2 precursor (SUMO-2)
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2) (MIF2 suppressor)
 sp|P61955|SUMO2_BOVIN Small ubiquitin-related modifier 2 precursor (SUMO-2)
           (Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
           (Sentrin-2)
          Length = 95

 Score =  106 bits (265), Expect = 1e-23
 Identities = 49/78 (62%), Positives = 60/78 (76%)
 Frame = +1

Query: 7   EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
           +HIN+KV GQDG+V+ FKIK++T L KLM AYC+R GL    +RF FDG  I ETDTP  
Sbjct: 16  DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 75

Query: 187 LDMEENDTIEVFQSQTGG 240
           L+ME+ DTI+VFQ QTGG
Sbjct: 76  LEMEDEDTIDVFQQQTGG 93
>sp|Q6EEV6|SUMO4_HUMAN Small ubiquitin-related modifier 4 precursor (SUMO-4) (Small
           ubiquitin-like protein 4)
          Length = 95

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 44/77 (57%), Positives = 53/77 (68%)
 Frame = +1

Query: 10  HINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTSL 189
           HIN+KV GQDG+V+ FKIK+ T L KLM AYC+  GL    +RF F G  I  TD P  L
Sbjct: 17  HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQL 76

Query: 190 DMEENDTIEVFQSQTGG 240
           +ME+ DTI+VFQ  TGG
Sbjct: 77  EMEDEDTIDVFQQPTGG 93
>sp|P55852|SMT3_ARATH Ubiquitin-like protein SMT3
          Length = 100

 Score = 90.9 bits (224), Expect = 8e-19
 Identities = 40/78 (51%), Positives = 56/78 (71%)
 Frame = +1

Query: 10  HINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTSL 189
           HIN+KV+GQDG  + F+IK++T L+KLMNAYCDR  +  +++ F+FDG  ++   TP  L
Sbjct: 17  HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDEL 76

Query: 190 DMEENDTIEVFQSQTGGS 243
           DME+ D I+    QTGGS
Sbjct: 77  DMEDGDEIDAMLHQTGGS 94
>sp|P63166|SUMO1_MOUSE Small ubiquitin-related modifier 1 precursor (SUMO-1)
           (Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
           (Ubiquitin-homology domain protein PIC1)
 sp|P63165|SUMO1_HUMAN Small ubiquitin-related modifier 1 precursor (SUMO-1)
           (Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
           (Ubiquitin-homology domain protein PIC1) (Ubiquitin-like
           protein UBL1) (GAP modifying protein 1) (GMP1) (Sentrin)
 sp|Q5R6J4|SUMO1_PONPY Small ubiquitin-related modifier 1 precursor (SUMO-1)
 sp|Q5E9D1|SUMO1_BOVIN Small ubiquitin-related modifier 1 precursor (SUMO-1)
          Length = 101

 Score = 87.8 bits (216), Expect = 7e-18
 Identities = 40/78 (51%), Positives = 54/78 (69%)
 Frame = +1

Query: 7   EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
           E+I +KV GQD + IHFK+K  T L+KL  +YC R G+  +++RF+F+G  I +  TP  
Sbjct: 20  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKE 79

Query: 187 LDMEENDTIEVFQSQTGG 240
           L MEE D IEV+Q QTGG
Sbjct: 80  LGMEEEDVIEVYQEQTGG 97
>sp|P55857|SMT3_ORYSA Ubiquitin-like protein SMT3
          Length = 100

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 38/77 (49%), Positives = 54/77 (70%)
 Frame = +1

Query: 10  HINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTSL 189
           HIN+KV+GQDG  + F+IK++T L+KLMNAYCDR  +  + + F+FDG  ++   TP  L
Sbjct: 20  HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDEL 79

Query: 190 DMEENDTIEVFQSQTGG 240
           +ME+ D I+    QTGG
Sbjct: 80  EMEDGDEIDAMLHQTGG 96
>sp|P55853|SMT3_CAEEL Ubiquitin-like protein SMT3
          Length = 91

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 37/78 (47%), Positives = 56/78 (71%)
 Frame = +1

Query: 7   EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
           E+I +KV GQD   +HF++K  T++ KL  +Y DR G+  +++RF+FDG  I + DTP +
Sbjct: 13  EYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKT 72

Query: 187 LDMEENDTIEVFQSQTGG 240
           L+ME++D IEV+Q Q GG
Sbjct: 73  LEMEDDDVIEVYQEQLGG 90
>sp|Q9MZD5|SUMO1_CERNI Small ubiquitin-related modifier 1 precursor (SUMO-1) (Sentrin)
          Length = 101

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 39/78 (50%), Positives = 53/78 (67%)
 Frame = +1

Query: 7   EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
           E+I +KV GQD + IHFK+K  T L+KL  +YC R G+  +++RF+F+G  I +  TP  
Sbjct: 20  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKE 79

Query: 187 LDMEENDTIEVFQSQTGG 240
           L MEE D IEV+  QTGG
Sbjct: 80  LGMEEEDVIEVYHEQTGG 97
>sp|O13351|PMT3_SCHPO Ubiquitin-like protein pmt3/smt3
          Length = 117

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 39/78 (50%), Positives = 47/78 (60%)
 Frame = +1

Query: 7   EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
           EHIN+KV GQD   + FKIKK T   KLM  YC R G   +++RF+ DG  I+   TP  
Sbjct: 34  EHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAE 93

Query: 187 LDMEENDTIEVFQSQTGG 240
           LDME+ D IE    Q GG
Sbjct: 94  LDMEDGDQIEAVLEQLGG 111
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,236,046
Number of Sequences: 369166
Number of extensions: 444931
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)