Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C11
(308 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 pr... 108 5e-24
sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 pr... 106 1e-23
sp|P61956|SUMO2_HUMAN Small ubiquitin-related modifier 2 pr... 106 1e-23
sp|Q6EEV6|SUMO4_HUMAN Small ubiquitin-related modifier 4 pr... 93 2e-19
sp|P55852|SMT3_ARATH Ubiquitin-like protein SMT3 91 8e-19
sp|P63166|SUMO1_MOUSE Small ubiquitin-related modifier 1 pr... 88 7e-18
sp|P55857|SMT3_ORYSA Ubiquitin-like protein SMT3 87 1e-17
sp|P55853|SMT3_CAEEL Ubiquitin-like protein SMT3 87 1e-17
sp|Q9MZD5|SUMO1_CERNI Small ubiquitin-related modifier 1 pr... 86 3e-17
sp|O13351|PMT3_SCHPO Ubiquitin-like protein pmt3/smt3 80 1e-15
>sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 precursor (SUMO-3)
(Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
Length = 110
Score = 108 bits (269), Expect = 5e-24
Identities = 50/79 (63%), Positives = 61/79 (77%)
Frame = +1
Query: 7 EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
+HIN+KV GQDG+V+ FKIK++T L KLM AYC+R GL +RF FDG I ETDTP
Sbjct: 15 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 74
Query: 187 LDMEENDTIEVFQSQTGGS 243
L+ME+ DTI+VFQ QTGGS
Sbjct: 75 LEMEDEDTIDVFQQQTGGS 93
>sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 precursor (SUMO-3)
(Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
Length = 103
Score = 106 bits (265), Expect = 1e-23
Identities = 49/78 (62%), Positives = 60/78 (76%)
Frame = +1
Query: 7 EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
+HIN+KV GQDG+V+ FKIK++T L KLM AYC+R GL +RF FDG I ETDTP
Sbjct: 15 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 74
Query: 187 LDMEENDTIEVFQSQTGG 240
L+ME+ DTI+VFQ QTGG
Sbjct: 75 LEMEDEDTIDVFQQQTGG 92
>sp|P61956|SUMO2_HUMAN Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2) (HSMT3)
sp|P61957|SUMO2_MOUSE Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2)
sp|P61959|SUMO2_RAT Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2)
sp|P61958|SUMO2_PIG Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2) (MIF2 suppressor)
sp|Q6LDZ8|SUMO2_CRIGR Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2) (MIF2 suppressor)
sp|P61955|SUMO2_BOVIN Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2)
Length = 95
Score = 106 bits (265), Expect = 1e-23
Identities = 49/78 (62%), Positives = 60/78 (76%)
Frame = +1
Query: 7 EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
+HIN+KV GQDG+V+ FKIK++T L KLM AYC+R GL +RF FDG I ETDTP
Sbjct: 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 75
Query: 187 LDMEENDTIEVFQSQTGG 240
L+ME+ DTI+VFQ QTGG
Sbjct: 76 LEMEDEDTIDVFQQQTGG 93
>sp|Q6EEV6|SUMO4_HUMAN Small ubiquitin-related modifier 4 precursor (SUMO-4) (Small
ubiquitin-like protein 4)
Length = 95
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/77 (57%), Positives = 53/77 (68%)
Frame = +1
Query: 10 HINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTSL 189
HIN+KV GQDG+V+ FKIK+ T L KLM AYC+ GL +RF F G I TD P L
Sbjct: 17 HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQL 76
Query: 190 DMEENDTIEVFQSQTGG 240
+ME+ DTI+VFQ TGG
Sbjct: 77 EMEDEDTIDVFQQPTGG 93
>sp|P55852|SMT3_ARATH Ubiquitin-like protein SMT3
Length = 100
Score = 90.9 bits (224), Expect = 8e-19
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +1
Query: 10 HINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTSL 189
HIN+KV+GQDG + F+IK++T L+KLMNAYCDR + +++ F+FDG ++ TP L
Sbjct: 17 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDEL 76
Query: 190 DMEENDTIEVFQSQTGGS 243
DME+ D I+ QTGGS
Sbjct: 77 DMEDGDEIDAMLHQTGGS 94
>sp|P63166|SUMO1_MOUSE Small ubiquitin-related modifier 1 precursor (SUMO-1)
(Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
(Ubiquitin-homology domain protein PIC1)
sp|P63165|SUMO1_HUMAN Small ubiquitin-related modifier 1 precursor (SUMO-1)
(Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
(Ubiquitin-homology domain protein PIC1) (Ubiquitin-like
protein UBL1) (GAP modifying protein 1) (GMP1) (Sentrin)
sp|Q5R6J4|SUMO1_PONPY Small ubiquitin-related modifier 1 precursor (SUMO-1)
sp|Q5E9D1|SUMO1_BOVIN Small ubiquitin-related modifier 1 precursor (SUMO-1)
Length = 101
Score = 87.8 bits (216), Expect = 7e-18
Identities = 40/78 (51%), Positives = 54/78 (69%)
Frame = +1
Query: 7 EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
E+I +KV GQD + IHFK+K T L+KL +YC R G+ +++RF+F+G I + TP
Sbjct: 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKE 79
Query: 187 LDMEENDTIEVFQSQTGG 240
L MEE D IEV+Q QTGG
Sbjct: 80 LGMEEEDVIEVYQEQTGG 97
>sp|P55857|SMT3_ORYSA Ubiquitin-like protein SMT3
Length = 100
Score = 87.0 bits (214), Expect = 1e-17
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +1
Query: 10 HINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTSL 189
HIN+KV+GQDG + F+IK++T L+KLMNAYCDR + + + F+FDG ++ TP L
Sbjct: 20 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDEL 79
Query: 190 DMEENDTIEVFQSQTGG 240
+ME+ D I+ QTGG
Sbjct: 80 EMEDGDEIDAMLHQTGG 96
>sp|P55853|SMT3_CAEEL Ubiquitin-like protein SMT3
Length = 91
Score = 87.0 bits (214), Expect = 1e-17
Identities = 37/78 (47%), Positives = 56/78 (71%)
Frame = +1
Query: 7 EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
E+I +KV GQD +HF++K T++ KL +Y DR G+ +++RF+FDG I + DTP +
Sbjct: 13 EYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKT 72
Query: 187 LDMEENDTIEVFQSQTGG 240
L+ME++D IEV+Q Q GG
Sbjct: 73 LEMEDDDVIEVYQEQLGG 90
>sp|Q9MZD5|SUMO1_CERNI Small ubiquitin-related modifier 1 precursor (SUMO-1) (Sentrin)
Length = 101
Score = 85.9 bits (211), Expect = 3e-17
Identities = 39/78 (50%), Positives = 53/78 (67%)
Frame = +1
Query: 7 EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
E+I +KV GQD + IHFK+K T L+KL +YC R G+ +++RF+F+G I + TP
Sbjct: 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKE 79
Query: 187 LDMEENDTIEVFQSQTGG 240
L MEE D IEV+ QTGG
Sbjct: 80 LGMEEEDVIEVYHEQTGG 97
>sp|O13351|PMT3_SCHPO Ubiquitin-like protein pmt3/smt3
Length = 117
Score = 80.5 bits (197), Expect = 1e-15
Identities = 39/78 (50%), Positives = 47/78 (60%)
Frame = +1
Query: 7 EHINVKVQGQDGAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 186
EHIN+KV GQD + FKIKK T KLM YC R G +++RF+ DG I+ TP
Sbjct: 34 EHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAE 93
Query: 187 LDMEENDTIEVFQSQTGG 240
LDME+ D IE Q GG
Sbjct: 94 LDMEDGDQIEAVLEQLGG 111
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,236,046
Number of Sequences: 369166
Number of extensions: 444931
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)