Planaria EST Database


DrC_02499

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02499
         (486 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22620|ABRA_PLAFC  101 kDa malaria antigen (P101) (Acidic...    32   0.60 
sp|P23745|ABRA_PLAFG  101 kDa malaria antigen (P101) (Acidic...    32   0.60 
sp|O73984|SYFB_PYRHO  Phenylalanyl-tRNA synthetase beta chai...    32   0.78 
sp|P16667|T2S3_STAAU  Type II restriction enzyme Sau3AI (End...    32   1.0  
sp|Q9UYX2|SYFB_PYRAB  Phenylalanyl-tRNA synthetase beta chai...    31   1.3  
sp|Q8U260|SYFB_PYRFU  Phenylalanyl-tRNA synthetase beta chai...    31   1.3  
sp|Q98QG4|SYK2_MYCPU  Lysyl-tRNA synthetase 2 (Lysine--tRNA ...    31   1.7  
sp|Q9PPZ6|PRIM_UREPA  DNA primase                                  30   2.3  
sp|Q8NM79|IPYR_CORGL  Inorganic pyrophosphatase (Pyrophospha...    30   3.0  
sp|Q7MP86|KSGA_VIBVY  Dimethyladenosine transferase (S-adeno...    30   3.0  
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
          Length = 743

 Score = 32.3 bits (72), Expect = 0.60
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +1

Query: 223 KTELEILKKFVEGPDNVDQIIIRNFYVHPKLTENLTIKKFDHEKLNFLEKEINYIAININ 402
           K  ++ LKK +E   N   +I +N   +P L   +       +K+N L++ ++YI  N N
Sbjct: 125 KKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCV-------KKMNMLKENVDYIQKNQN 177

Query: 403 LVKSVVVKQVYELFFN 450
           L K ++ ++    F N
Sbjct: 178 LFKELMNQKATYSFVN 193
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
          Length = 600

 Score = 32.3 bits (72), Expect = 0.60
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +1

Query: 223 KTELEILKKFVEGPDNVDQIIIRNFYVHPKLTENLTIKKFDHEKLNFLEKEINYIAININ 402
           K  ++ LKK +E   N   +I +N   +P L   +       +K+N L++ ++YI  N N
Sbjct: 42  KKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCV-------KKMNMLKENVDYIQKNQN 94

Query: 403 LVKSVVVKQVYELFFN 450
           L K ++ ++    F N
Sbjct: 95  LFKELMNQKATYSFVN 110
>sp|O73984|SYFB_PYRHO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS)
          Length = 556

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
 Frame = +1

Query: 181 RDLIDHFVVLFDYSKTELEILKKFVEG-----PDNVDQI--IIRNFYVHPKLTENLTIKK 339
           RD+++  ++ + Y+  E E  K  V+G      D  D I  ++  F +   +T NLT K+
Sbjct: 336 RDILEDVLIAYGYNNIEPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQEVMTFNLTNKE 395

Query: 340 FDHEKLNFLEKEINYIA 390
              +K+N  E+EI  IA
Sbjct: 396 VQFKKMNIPEEEIVEIA 412
>sp|P16667|T2S3_STAAU Type II restriction enzyme Sau3AI (Endonuclease Sau3AI) (R.Sau3AI)
          Length = 489

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
 Frame = +1

Query: 238 ILKKFVEGPDNVDQIIIRNFYVHPKLTENLTIKKF------------DHEKLNFLEKEIN 381
           IL+K+V G + +D I+   F +  K  E++  +KF            +H  +N  EK +N
Sbjct: 211 ILRKYVLGDEKIDSIVKDPFEIKEKSIEDIVFEKFQPYINWSIDKLCEHFSINKGEKGLN 270

Query: 382 Y 384
           Y
Sbjct: 271 Y 271
>sp|Q9UYX2|SYFB_PYRAB Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS)
          Length = 556

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
 Frame = +1

Query: 181 RDLIDHFVVLFDYSKTELEILKKFVEG-----PDNVDQI--IIRNFYVHPKLTENLTIKK 339
           RD+++  ++ + Y+  E E  K  V+G      D  D I  ++  F +   +T NLT K+
Sbjct: 336 RDVLEDVLIAYGYNNIEPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQEIMTFNLTNKE 395

Query: 340 FDHEKLNFLEKEINYIA 390
              +K+N  E+EI  IA
Sbjct: 396 VQFKKMNIPEEEIVEIA 412
>sp|Q8U260|SYFB_PYRFU Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS)
          Length = 556

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
 Frame = +1

Query: 181 RDLIDHFVVLFDYSKTELEILKKFVEG-----PDNVDQI--IIRNFYVHPKLTENLTIKK 339
           RD+++  ++ + Y+  + E  K  V+G      D  D I  ++  F +   +T NLT K+
Sbjct: 337 RDVLEDVLIAYGYNNIDPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQEVMTFNLTSKE 396

Query: 340 FDHEKLNFLEKEINYIA 390
              +K+N  E+EI  IA
Sbjct: 397 VQFDKMNIPEEEIVEIA 413
>sp|Q98QG4|SYK2_MYCPU Lysyl-tRNA synthetase 2 (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 491

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 328 TIKKFDHEKLNFLEKEINYIAININLVKSVVVKQVYELFFNG 453
           T KKFDHEK+N    EIN      NL K  ++++  +L   G
Sbjct: 28  TFKKFDHEKINIYSNEIN--QKYSNLTKDELLEKQIKLIVAG 67
>sp|Q9PPZ6|PRIM_UREPA DNA primase
          Length = 641

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -1

Query: 456 KTIEKQFINLFNDHRFDQIDIYGDVIDFLFKKIQFFVIEFLDR*ILG*FRMNVEISNDDL 277
           K I+K FIN  N+      +I+  VID+L K+        L++  L  F++    +ND+L
Sbjct: 120 KQIQKWFINFLNNKN----NIH--VIDYLTKRN-------LNKNDLAYFKIGYAPNNDEL 166

Query: 276 INIIRT-FNELLQ 241
           +N+I++ +N L+Q
Sbjct: 167 LNLIKSNYNNLIQ 179
>sp|Q8NM79|IPYR_CORGL Inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 158

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 447 EKQFINLFNDHRFDQIDIYGDVIDFLFKKIQFFVIEFLD 331
           + + +++ +D R+D I    DV DFL  +I+ F + + D
Sbjct: 89  DDKLLSVLDDPRYDHIQDISDVSDFLKDEIEHFFVHYKD 127
>sp|Q7MP86|KSGA_VIBVY Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase)
 sp|Q8DED2|KSGA_VIBVU Dimethyladenosine transferase (S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
           dimethylase) (High level kasugamycin resistance protein
           ksgA) (Kasugamycin dimethyltransferase)
          Length = 268

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 271 VDQIIIRNFYVHPKLTENLTIKKFDHEKLNF--LEKEINYIAININLVKSVVVKQVYELF 444
           +D+ +      HP+L + LTI + D  + +F  L K  N + I  NL  ++    ++ LF
Sbjct: 67  LDRDLAERLRTHPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126

Query: 445 FNGFEMQLWHFL 480
               ++Q  HF+
Sbjct: 127 EFHKDIQDMHFM 138
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,026,577
Number of Sequences: 369166
Number of extensions: 741632
Number of successful extensions: 2353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)