Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C03
(486 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 32 0.60
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 32 0.60
sp|O73984|SYFB_PYRHO Phenylalanyl-tRNA synthetase beta chai... 32 0.78
sp|P16667|T2S3_STAAU Type II restriction enzyme Sau3AI (End... 32 1.0
sp|Q9UYX2|SYFB_PYRAB Phenylalanyl-tRNA synthetase beta chai... 31 1.3
sp|Q8U260|SYFB_PYRFU Phenylalanyl-tRNA synthetase beta chai... 31 1.3
sp|Q98QG4|SYK2_MYCPU Lysyl-tRNA synthetase 2 (Lysine--tRNA ... 31 1.7
sp|Q9PPZ6|PRIM_UREPA DNA primase 30 2.3
sp|Q8NM79|IPYR_CORGL Inorganic pyrophosphatase (Pyrophospha... 30 3.0
sp|Q7MP86|KSGA_VIBVY Dimethyladenosine transferase (S-adeno... 30 3.0
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 32.3 bits (72), Expect = 0.60
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +1
Query: 223 KTELEILKKFVEGPDNVDQIIIRNFYVHPKLTENLTIKKFDHEKLNFLEKEINYIAININ 402
K ++ LKK +E N +I +N +P L + +K+N L++ ++YI N N
Sbjct: 125 KKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCV-------KKMNMLKENVDYIQKNQN 177
Query: 403 LVKSVVVKQVYELFFN 450
L K ++ ++ F N
Sbjct: 178 LFKELMNQKATYSFVN 193
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 32.3 bits (72), Expect = 0.60
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +1
Query: 223 KTELEILKKFVEGPDNVDQIIIRNFYVHPKLTENLTIKKFDHEKLNFLEKEINYIAININ 402
K ++ LKK +E N +I +N +P L + +K+N L++ ++YI N N
Sbjct: 42 KKLIKALKKNIESIQNKKHLIYKNKSYNPLLLSCV-------KKMNMLKENVDYIQKNQN 94
Query: 403 LVKSVVVKQVYELFFN 450
L K ++ ++ F N
Sbjct: 95 LFKELMNQKATYSFVN 110
>sp|O73984|SYFB_PYRHO Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 556
Score = 32.0 bits (71), Expect = 0.78
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +1
Query: 181 RDLIDHFVVLFDYSKTELEILKKFVEG-----PDNVDQI--IIRNFYVHPKLTENLTIKK 339
RD+++ ++ + Y+ E E K V+G D D I ++ F + +T NLT K+
Sbjct: 336 RDILEDVLIAYGYNNIEPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQEVMTFNLTNKE 395
Query: 340 FDHEKLNFLEKEINYIA 390
+K+N E+EI IA
Sbjct: 396 VQFKKMNIPEEEIVEIA 412
>sp|P16667|T2S3_STAAU Type II restriction enzyme Sau3AI (Endonuclease Sau3AI) (R.Sau3AI)
Length = 489
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Frame = +1
Query: 238 ILKKFVEGPDNVDQIIIRNFYVHPKLTENLTIKKF------------DHEKLNFLEKEIN 381
IL+K+V G + +D I+ F + K E++ +KF +H +N EK +N
Sbjct: 211 ILRKYVLGDEKIDSIVKDPFEIKEKSIEDIVFEKFQPYINWSIDKLCEHFSINKGEKGLN 270
Query: 382 Y 384
Y
Sbjct: 271 Y 271
>sp|Q9UYX2|SYFB_PYRAB Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 556
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +1
Query: 181 RDLIDHFVVLFDYSKTELEILKKFVEG-----PDNVDQI--IIRNFYVHPKLTENLTIKK 339
RD+++ ++ + Y+ E E K V+G D D I ++ F + +T NLT K+
Sbjct: 336 RDVLEDVLIAYGYNNIEPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQEIMTFNLTNKE 395
Query: 340 FDHEKLNFLEKEINYIA 390
+K+N E+EI IA
Sbjct: 396 VQFKKMNIPEEEIVEIA 412
>sp|Q8U260|SYFB_PYRFU Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 556
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = +1
Query: 181 RDLIDHFVVLFDYSKTELEILKKFVEG-----PDNVDQI--IIRNFYVHPKLTENLTIKK 339
RD+++ ++ + Y+ + E K V+G D D I ++ F + +T NLT K+
Sbjct: 337 RDVLEDVLIAYGYNNIDPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQEVMTFNLTSKE 396
Query: 340 FDHEKLNFLEKEINYIA 390
+K+N E+EI IA
Sbjct: 397 VQFDKMNIPEEEIVEIA 413
>sp|Q98QG4|SYK2_MYCPU Lysyl-tRNA synthetase 2 (Lysine--tRNA ligase 2) (LysRS 2)
Length = 491
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 328 TIKKFDHEKLNFLEKEINYIAININLVKSVVVKQVYELFFNG 453
T KKFDHEK+N EIN NL K ++++ +L G
Sbjct: 28 TFKKFDHEKINIYSNEIN--QKYSNLTKDELLEKQIKLIVAG 67
>sp|Q9PPZ6|PRIM_UREPA DNA primase
Length = 641
Score = 30.4 bits (67), Expect = 2.3
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -1
Query: 456 KTIEKQFINLFNDHRFDQIDIYGDVIDFLFKKIQFFVIEFLDR*ILG*FRMNVEISNDDL 277
K I+K FIN N+ +I+ VID+L K+ L++ L F++ +ND+L
Sbjct: 120 KQIQKWFINFLNNKN----NIH--VIDYLTKRN-------LNKNDLAYFKIGYAPNNDEL 166
Query: 276 INIIRT-FNELLQ 241
+N+I++ +N L+Q
Sbjct: 167 LNLIKSNYNNLIQ 179
>sp|Q8NM79|IPYR_CORGL Inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase)
Length = 158
Score = 30.0 bits (66), Expect = 3.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 447 EKQFINLFNDHRFDQIDIYGDVIDFLFKKIQFFVIEFLD 331
+ + +++ +D R+D I DV DFL +I+ F + + D
Sbjct: 89 DDKLLSVLDDPRYDHIQDISDVSDFLKDEIEHFFVHYKD 127
>sp|Q7MP86|KSGA_VIBVY Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
sp|Q8DED2|KSGA_VIBVU Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 268
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 271 VDQIIIRNFYVHPKLTENLTIKKFDHEKLNF--LEKEINYIAININLVKSVVVKQVYELF 444
+D+ + HP+L + LTI + D + +F L K N + I NL ++ ++ LF
Sbjct: 67 LDRDLAERLRTHPELADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLF 126
Query: 445 FNGFEMQLWHFL 480
++Q HF+
Sbjct: 127 EFHKDIQDMHFM 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,026,577
Number of Sequences: 369166
Number of extensions: 741632
Number of successful extensions: 2353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)