Planaria EST Database


DrC_02497

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02497
         (423 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58536|YB36_METJA  Hypothetical protein MJ1136                 103   1e-22
sp|P43577|GNA1_YEAST  Glucosamine 6-phosphate N-acetyltransf...    33   0.32 
sp|P21466|RS4_BACSU  30S ribosomal protein S4 (BS4)                32   0.55 
sp|P80373|RS4_THET8  30S ribosomal protein S4 >gi|50401228|s...    31   1.2  
sp|P59599|Y2212_CHLTE  Hypothetical protein CT2212                 30   1.6  
sp|P87159|NIF1_SCHPO  Mitosis inhibitor nif1 (Nim1 interacti...    30   2.7  
sp|Q8LPL8|POT13_ARATH  Potassium transporter 13 (AtPOT13) (A...    29   3.5  
sp|P53476|ACT_TOXGO  Actin                                         29   3.5  
sp|Q9KVM1|HEM3_VIBCH  Porphobilinogen deaminase (PBG) (Hydro...    29   4.6  
sp|Q6RET7|CCAMK_MEDTR  Calcium and calcium/calmodulin-depend...    29   4.6  
>sp|Q58536|YB36_METJA Hypothetical protein MJ1136
          Length = 541

 Score =  103 bits (257), Expect = 1e-22
 Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
 Frame = +1

Query: 1   YVANGGWETFLSYEDPDRDILVGLCRLRQCSSETFRPELLPKEKSDIEEDLPGCSIIREL 180
           Y A+GG E FLSYED   DIL+   RLR    E ++P    KE  D         ++R+L
Sbjct: 421 YEASGGTEIFLSYEDVKNDILIAFLRLR----EPYKP--FRKEIDD------NTMLVRQL 468

Query: 181 HVYGTAVPI--NAKDPTKFQHQGFGKLLIEESERIARDEHGSVKIAIISGVGTRNYYRKM 354
           HV G   P+  + K+ T +QH+G+G+ L+EE+ERIA++E G  KI + SG+G R YYRK+
Sbjct: 469 HVCGQEKPLTKDLKEIT-WQHKGYGRKLLEEAERIAKEEFGKKKILVTSGIGVREYYRKL 527

Query: 355 GYELEGPYMVKML 393
           GYE  G YM K L
Sbjct: 528 GYERVGAYMGKYL 540
>sp|P43577|GNA1_YEAST Glucosamine 6-phosphate N-acetyltransferase (Phosphoglucosamine
           transacetylase) (Phosphoglucosamine acetylase)
          Length = 159

 Score = 32.7 bits (73), Expect = 0.32
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = +1

Query: 166 IIRELHVYGTAVPINAKDPTKFQHQGFGKLLIEESERIARDEHGSVKIAIISGVGTRNYY 345
           II EL + G    I     +K+Q QG GKLLI++   I  D +G  KI +        +Y
Sbjct: 87  IIHELGLCGHIEDIAVN--SKYQGQGLGKLLIDQLVTIGFD-YGCYKIILDCDEKNVKFY 143

Query: 346 RKMGYELEGPYM 381
            K G+   G  M
Sbjct: 144 EKCGFSNAGVEM 155
>sp|P21466|RS4_BACSU 30S ribosomal protein S4 (BS4)
          Length = 200

 Score = 32.0 bits (71), Expect = 0.55
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 277 FFRILQSTISRIL-DAGILWDPLHLSELQCHTHVTL**SSSRVDLPRYLISP*ATIPAGR 101
           F  +L S +  ++   G+        +L  H H+ +    SRVD+P YL+ P  TI    
Sbjct: 86  FMILLDSRLDNVVYKLGLARTRRQARQLVNHGHILV--DGSRVDIPSYLVKPGQTIGVRE 143

Query: 100 FPRNIAVI 77
             RN+++I
Sbjct: 144 KSRNLSII 151
>sp|P80373|RS4_THET8 30S ribosomal protein S4
 sp|P62664|RS4_THET2 30S ribosomal protein S4
          Length = 209

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -3

Query: 283 SLFFRILQSTISRIL-DAGILWDPLHLSELQCHTHVTL**SSSRVDLPRYLISP*ATIPA 107
           S+F  +L+S +  ++   G         +L  H H+T+  +  RVDLP Y + P   I  
Sbjct: 91  SVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITV--NGRRVDLPSYRVRPGDEIAV 148

Query: 106 GRFPRNIAVICTN 68
               RN+ +I  N
Sbjct: 149 AEKSRNLELIRQN 161
>sp|P59599|Y2212_CHLTE Hypothetical protein CT2212
          Length = 155

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +1

Query: 226 KFQHQGFGKLLIEESERIARDEHGSVKIAIISGVGTRNYYRKMGY-ELEGPY 378
           +F+++G G+LL+E++E +  +E  +    +    G   ++++MGY E+E  Y
Sbjct: 80  EFRNKGIGRLLVEKAEAVLSEEGVNEVFVLTLNSG---FFKRMGYKEIEKEY 128
>sp|P87159|NIF1_SCHPO Mitosis inhibitor nif1 (Nim1 interacting factor 1)
          Length = 681

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = -2

Query: 191 PYTCNSLIIEQPGRSSSISDFSLGNNSGRKVSEEHCRNLHKPTRISRSG--SSYERKVS- 21
           P   NS ++ +    + +S+   GN S ++  +EH   +H  T +SR    SS ++ +S 
Sbjct: 270 PELSNSNLLAKNESPADVSNNESGNESSKEPDKEHSTPIHPTTPVSRCARPSSRQQTISI 329

Query: 20  ---QPPF 9
              Q PF
Sbjct: 330 LQAQSPF 336
>sp|Q8LPL8|POT13_ARATH Potassium transporter 13 (AtPOT13) (AtKT5)
          Length = 855

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 172 RELHVYGTAVPINAKDPTKFQHQGFGKLLIEESERIARDE 291
           R  H++        KD  K  HQ F ++LIE  E+  R E
Sbjct: 667 RSYHLFRCVARYGYKDVRKESHQAFEQILIESLEKFIRKE 706
>sp|P53476|ACT_TOXGO Actin
          Length = 376

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +1

Query: 34  SYEDPDRDIL-VGLCRLRQCSSETFRPELLPKEKSDIE----EDLPGCSIIRELHVYGTA 198
           SYE PD +I+ VG  R R C    F+P  L KE + +     + +  C +     +YG  
Sbjct: 240 SYELPDGNIITVGNERFR-CPEALFQPSFLGKEAAGVHRTTFDSIMKCDVDIRKDLYGNV 298

Query: 199 VPINAKDPTKFQHQGFGKLLIEESERIARDEHGSVKIAIIS 321
           V           ++G G+ L +E   +A     ++KI +++
Sbjct: 299 VLSGGTT----MYEGIGERLTKELTSLA---PSTMKIKVVA 332
>sp|Q9KVM1|HEM3_VIBCH Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase)
           (HMBS) (Pre-uroporphyrinogen synthase)
          Length = 311

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 25  TFLSYEDPDRDILVGLCRLR-QCSSETFRPELLPKE 129
           T+   ED     +VG C LR QC  +  RP+L+ KE
Sbjct: 112 TYAKIEDLPSGAIVGTCSLRRQCQLKAARPDLVIKE 147
>sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-dependent serine/threonine-protein
           kinase DMI-3 (Does not make infections protein 3) (CCaMK
           DMI3) (MtCCaMK)
          Length = 523

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 197 AVPYTCNSLIIEQPGRSSSISDFSLGNNSGRKVSEE 90
           A+PY C    I +PG+   I D    NN G+   +E
Sbjct: 467 ALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDE 502
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,446,511
Number of Sequences: 369166
Number of extensions: 1272490
Number of successful extensions: 3707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3706
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)