Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_B20
(423 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58536|YB36_METJA Hypothetical protein MJ1136 103 1e-22
sp|P43577|GNA1_YEAST Glucosamine 6-phosphate N-acetyltransf... 33 0.32
sp|P21466|RS4_BACSU 30S ribosomal protein S4 (BS4) 32 0.55
sp|P80373|RS4_THET8 30S ribosomal protein S4 >gi|50401228|s... 31 1.2
sp|P59599|Y2212_CHLTE Hypothetical protein CT2212 30 1.6
sp|P87159|NIF1_SCHPO Mitosis inhibitor nif1 (Nim1 interacti... 30 2.7
sp|Q8LPL8|POT13_ARATH Potassium transporter 13 (AtPOT13) (A... 29 3.5
sp|P53476|ACT_TOXGO Actin 29 3.5
sp|Q9KVM1|HEM3_VIBCH Porphobilinogen deaminase (PBG) (Hydro... 29 4.6
sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-depend... 29 4.6
>sp|Q58536|YB36_METJA Hypothetical protein MJ1136
Length = 541
Score = 103 bits (257), Expect = 1e-22
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Frame = +1
Query: 1 YVANGGWETFLSYEDPDRDILVGLCRLRQCSSETFRPELLPKEKSDIEEDLPGCSIIREL 180
Y A+GG E FLSYED DIL+ RLR E ++P KE D ++R+L
Sbjct: 421 YEASGGTEIFLSYEDVKNDILIAFLRLR----EPYKP--FRKEIDD------NTMLVRQL 468
Query: 181 HVYGTAVPI--NAKDPTKFQHQGFGKLLIEESERIARDEHGSVKIAIISGVGTRNYYRKM 354
HV G P+ + K+ T +QH+G+G+ L+EE+ERIA++E G KI + SG+G R YYRK+
Sbjct: 469 HVCGQEKPLTKDLKEIT-WQHKGYGRKLLEEAERIAKEEFGKKKILVTSGIGVREYYRKL 527
Query: 355 GYELEGPYMVKML 393
GYE G YM K L
Sbjct: 528 GYERVGAYMGKYL 540
>sp|P43577|GNA1_YEAST Glucosamine 6-phosphate N-acetyltransferase (Phosphoglucosamine
transacetylase) (Phosphoglucosamine acetylase)
Length = 159
Score = 32.7 bits (73), Expect = 0.32
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +1
Query: 166 IIRELHVYGTAVPINAKDPTKFQHQGFGKLLIEESERIARDEHGSVKIAIISGVGTRNYY 345
II EL + G I +K+Q QG GKLLI++ I D +G KI + +Y
Sbjct: 87 IIHELGLCGHIEDIAVN--SKYQGQGLGKLLIDQLVTIGFD-YGCYKIILDCDEKNVKFY 143
Query: 346 RKMGYELEGPYM 381
K G+ G M
Sbjct: 144 EKCGFSNAGVEM 155
>sp|P21466|RS4_BACSU 30S ribosomal protein S4 (BS4)
Length = 200
Score = 32.0 bits (71), Expect = 0.55
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 277 FFRILQSTISRIL-DAGILWDPLHLSELQCHTHVTL**SSSRVDLPRYLISP*ATIPAGR 101
F +L S + ++ G+ +L H H+ + SRVD+P YL+ P TI
Sbjct: 86 FMILLDSRLDNVVYKLGLARTRRQARQLVNHGHILV--DGSRVDIPSYLVKPGQTIGVRE 143
Query: 100 FPRNIAVI 77
RN+++I
Sbjct: 144 KSRNLSII 151
>sp|P80373|RS4_THET8 30S ribosomal protein S4
sp|P62664|RS4_THET2 30S ribosomal protein S4
Length = 209
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -3
Query: 283 SLFFRILQSTISRIL-DAGILWDPLHLSELQCHTHVTL**SSSRVDLPRYLISP*ATIPA 107
S+F +L+S + ++ G +L H H+T+ + RVDLP Y + P I
Sbjct: 91 SVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITV--NGRRVDLPSYRVRPGDEIAV 148
Query: 106 GRFPRNIAVICTN 68
RN+ +I N
Sbjct: 149 AEKSRNLELIRQN 161
>sp|P59599|Y2212_CHLTE Hypothetical protein CT2212
Length = 155
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 226 KFQHQGFGKLLIEESERIARDEHGSVKIAIISGVGTRNYYRKMGY-ELEGPY 378
+F+++G G+LL+E++E + +E + + G ++++MGY E+E Y
Sbjct: 80 EFRNKGIGRLLVEKAEAVLSEEGVNEVFVLTLNSG---FFKRMGYKEIEKEY 128
>sp|P87159|NIF1_SCHPO Mitosis inhibitor nif1 (Nim1 interacting factor 1)
Length = 681
Score = 29.6 bits (65), Expect = 2.7
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -2
Query: 191 PYTCNSLIIEQPGRSSSISDFSLGNNSGRKVSEEHCRNLHKPTRISRSG--SSYERKVS- 21
P NS ++ + + +S+ GN S ++ +EH +H T +SR SS ++ +S
Sbjct: 270 PELSNSNLLAKNESPADVSNNESGNESSKEPDKEHSTPIHPTTPVSRCARPSSRQQTISI 329
Query: 20 ---QPPF 9
Q PF
Sbjct: 330 LQAQSPF 336
>sp|Q8LPL8|POT13_ARATH Potassium transporter 13 (AtPOT13) (AtKT5)
Length = 855
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 172 RELHVYGTAVPINAKDPTKFQHQGFGKLLIEESERIARDE 291
R H++ KD K HQ F ++LIE E+ R E
Sbjct: 667 RSYHLFRCVARYGYKDVRKESHQAFEQILIESLEKFIRKE 706
>sp|P53476|ACT_TOXGO Actin
Length = 376
Score = 29.3 bits (64), Expect = 3.5
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +1
Query: 34 SYEDPDRDIL-VGLCRLRQCSSETFRPELLPKEKSDIE----EDLPGCSIIRELHVYGTA 198
SYE PD +I+ VG R R C F+P L KE + + + + C + +YG
Sbjct: 240 SYELPDGNIITVGNERFR-CPEALFQPSFLGKEAAGVHRTTFDSIMKCDVDIRKDLYGNV 298
Query: 199 VPINAKDPTKFQHQGFGKLLIEESERIARDEHGSVKIAIIS 321
V ++G G+ L +E +A ++KI +++
Sbjct: 299 VLSGGTT----MYEGIGERLTKELTSLA---PSTMKIKVVA 332
>sp|Q9KVM1|HEM3_VIBCH Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase)
(HMBS) (Pre-uroporphyrinogen synthase)
Length = 311
Score = 28.9 bits (63), Expect = 4.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 25 TFLSYEDPDRDILVGLCRLR-QCSSETFRPELLPKE 129
T+ ED +VG C LR QC + RP+L+ KE
Sbjct: 112 TYAKIEDLPSGAIVGTCSLRRQCQLKAARPDLVIKE 147
>sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-dependent serine/threonine-protein
kinase DMI-3 (Does not make infections protein 3) (CCaMK
DMI3) (MtCCaMK)
Length = 523
Score = 28.9 bits (63), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 197 AVPYTCNSLIIEQPGRSSSISDFSLGNNSGRKVSEE 90
A+PY C I +PG+ I D NN G+ +E
Sbjct: 467 ALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDE 502
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,446,511
Number of Sequences: 369166
Number of extensions: 1272490
Number of successful extensions: 3707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3706
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)