Planaria EST Database


DrC_02493

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02493
         (175 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P83876|TXN4A_HUMAN  Thioredoxin-like protein 4A (Thioredo...    89   4e-18
sp|P87215|DIMI_SCHPO  Mitosis protein dim1                         89   4e-18
sp|Q75BD8|DIB1_ASHGO  Spliceosomal protein DIB1                    67   2e-11
sp|Q06819|DIB1_YEAST  Spliceosomal protein DIB1                    66   3e-11
sp|Q6FMI2|DIB1_CANGA  Spliceosomal protein DIB1                    61   9e-10
sp|Q8BUH1|TXN4B_MOUSE  Thioredoxin-like protein 4B                 34   0.12 
sp|Q9NX01|TXN4B_HUMAN  Thioredoxin-like protein 4B (Dim1-lik...    33   0.16 
sp|P15895|VG4_SPV1R  Gene 4 protein                                28   6.5  
>sp|P83876|TXN4A_HUMAN Thioredoxin-like protein 4A (Thioredoxin-like U5 snRNP protein
           U5-15kD) (Spliceosomal U5 snRNP-specific 15 kDa protein)
           (DIM1 protein homolog)
 sp|P83877|TXN4A_MOUSE Thioredoxin-like protein 4A (Thioredoxin-like U5 snRNP protein
           U5-15kD) (Spliceosomal U5 snRNP-specific 15 kDa protein)
           (DIM1 protein homolog)
          Length = 142

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 40/46 (86%), Positives = 43/46 (93%)
 Frame = +2

Query: 17  GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY 154
           GNNNKINW +E  QEM+DIIETV+RGARKGRGLVVSPKDYSTKYRY
Sbjct: 97  GNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P87215|DIMI_SCHPO Mitosis protein dim1
          Length = 142

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 38/46 (82%), Positives = 44/46 (95%)
 Frame = +2

Query: 17  GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY 154
           GNNNKINWP+E  QEMIDIIET+FRGARKG+GLV+SPKDYST++RY
Sbjct: 97  GNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142
>sp|Q75BD8|DIB1_ASHGO Spliceosomal protein DIB1
          Length = 143

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 30/43 (69%), Positives = 38/43 (88%)
 Frame = +2

Query: 17  GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTK 145
           GNNNK+N+ +++ QEMIDIIETVFRGAR+ +GLVVSP DY+ K
Sbjct: 98  GNNNKMNFVVDNKQEMIDIIETVFRGARRNKGLVVSPYDYNYK 140
>sp|Q06819|DIB1_YEAST Spliceosomal protein DIB1
          Length = 143

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 29/43 (67%), Positives = 37/43 (86%)
 Frame = +2

Query: 17  GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTK 145
           GNNNK+N+ ++  QEMIDI+ET+FRGARK +GLVVSP DY+ K
Sbjct: 98  GNNNKLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHK 140
>sp|Q6FMI2|DIB1_CANGA Spliceosomal protein DIB1
          Length = 142

 Score = 60.8 bits (146), Expect = 9e-10
 Identities = 27/43 (62%), Positives = 36/43 (83%)
 Frame = +2

Query: 17  GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTK 145
           GNNNK+N+  +  QE+IDI+ET+FRGARK +G+VVSP DY+ K
Sbjct: 96  GNNNKMNFLPDDKQELIDIMETIFRGARKNKGIVVSPYDYNHK 138
>sp|Q8BUH1|TXN4B_MOUSE Thioredoxin-like protein 4B
          Length = 149

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 56  QEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY**LY 166
           Q+ ID+IE ++RGA +G+ +V SP D     +Y  LY
Sbjct: 110 QDFIDLIEVIYRGAMRGKLIVQSPIDPKNVPKYDLLY 146
>sp|Q9NX01|TXN4B_HUMAN Thioredoxin-like protein 4B (Dim1-like protein)
          Length = 149

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 56  QEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY**LY 166
           Q+ ID+IE ++RGA +G+ +V SP D     +Y  LY
Sbjct: 110 QDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLY 146
>sp|P15895|VG4_SPV1R Gene 4 protein
          Length = 146

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 8   ARGGNNNKINWPIEHDQEMID 70
           A   NNN  NW +E +QE+I+
Sbjct: 120 ANNNNNNLTNWSVEKEQELIN 140
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,346,014
Number of Sequences: 369166
Number of extensions: 218835
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)