Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_A22
(175 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P83876|TXN4A_HUMAN Thioredoxin-like protein 4A (Thioredo... 89 4e-18
sp|P87215|DIMI_SCHPO Mitosis protein dim1 89 4e-18
sp|Q75BD8|DIB1_ASHGO Spliceosomal protein DIB1 67 2e-11
sp|Q06819|DIB1_YEAST Spliceosomal protein DIB1 66 3e-11
sp|Q6FMI2|DIB1_CANGA Spliceosomal protein DIB1 61 9e-10
sp|Q8BUH1|TXN4B_MOUSE Thioredoxin-like protein 4B 34 0.12
sp|Q9NX01|TXN4B_HUMAN Thioredoxin-like protein 4B (Dim1-lik... 33 0.16
sp|P15895|VG4_SPV1R Gene 4 protein 28 6.5
>sp|P83876|TXN4A_HUMAN Thioredoxin-like protein 4A (Thioredoxin-like U5 snRNP protein
U5-15kD) (Spliceosomal U5 snRNP-specific 15 kDa protein)
(DIM1 protein homolog)
sp|P83877|TXN4A_MOUSE Thioredoxin-like protein 4A (Thioredoxin-like U5 snRNP protein
U5-15kD) (Spliceosomal U5 snRNP-specific 15 kDa protein)
(DIM1 protein homolog)
Length = 142
Score = 88.6 bits (218), Expect = 4e-18
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +2
Query: 17 GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY 154
GNNNKINW +E QEM+DIIETV+RGARKGRGLVVSPKDYSTKYRY
Sbjct: 97 GNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P87215|DIMI_SCHPO Mitosis protein dim1
Length = 142
Score = 88.6 bits (218), Expect = 4e-18
Identities = 38/46 (82%), Positives = 44/46 (95%)
Frame = +2
Query: 17 GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY 154
GNNNKINWP+E QEMIDIIET+FRGARKG+GLV+SPKDYST++RY
Sbjct: 97 GNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142
>sp|Q75BD8|DIB1_ASHGO Spliceosomal protein DIB1
Length = 143
Score = 66.6 bits (161), Expect = 2e-11
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +2
Query: 17 GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTK 145
GNNNK+N+ +++ QEMIDIIETVFRGAR+ +GLVVSP DY+ K
Sbjct: 98 GNNNKMNFVVDNKQEMIDIIETVFRGARRNKGLVVSPYDYNYK 140
>sp|Q06819|DIB1_YEAST Spliceosomal protein DIB1
Length = 143
Score = 65.9 bits (159), Expect = 3e-11
Identities = 29/43 (67%), Positives = 37/43 (86%)
Frame = +2
Query: 17 GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTK 145
GNNNK+N+ ++ QEMIDI+ET+FRGARK +GLVVSP DY+ K
Sbjct: 98 GNNNKLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHK 140
>sp|Q6FMI2|DIB1_CANGA Spliceosomal protein DIB1
Length = 142
Score = 60.8 bits (146), Expect = 9e-10
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +2
Query: 17 GNNNKINWPIEHDQEMIDIIETVFRGARKGRGLVVSPKDYSTK 145
GNNNK+N+ + QE+IDI+ET+FRGARK +G+VVSP DY+ K
Sbjct: 96 GNNNKMNFLPDDKQELIDIMETIFRGARKNKGIVVSPYDYNHK 138
>sp|Q8BUH1|TXN4B_MOUSE Thioredoxin-like protein 4B
Length = 149
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 56 QEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY**LY 166
Q+ ID+IE ++RGA +G+ +V SP D +Y LY
Sbjct: 110 QDFIDLIEVIYRGAMRGKLIVQSPIDPKNVPKYDLLY 146
>sp|Q9NX01|TXN4B_HUMAN Thioredoxin-like protein 4B (Dim1-like protein)
Length = 149
Score = 33.5 bits (75), Expect = 0.16
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 56 QEMIDIIETVFRGARKGRGLVVSPKDYSTKYRY**LY 166
Q+ ID+IE ++RGA +G+ +V SP D +Y LY
Sbjct: 110 QDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLY 146
>sp|P15895|VG4_SPV1R Gene 4 protein
Length = 146
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 8 ARGGNNNKINWPIEHDQEMID 70
A NNN NW +E +QE+I+
Sbjct: 120 ANNNNNNLTNWSVEKEQELIN 140
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,346,014
Number of Sequences: 369166
Number of extensions: 218835
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)