Planaria EST Database


DrC_02491

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02491
         (342 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BML1|MICA2_MOUSE  Protein MICAL-2                             30   1.7  
sp|Q9UUJ3|RGA9_SCHPO  Probable Rho-GTPase-activating protein 9     29   3.9  
sp|P57249|SYI_BUCAI  Isoleucyl-tRNA synthetase (Isoleucine--...    29   3.9  
sp|Q7NB77|SCPB_MYCGA  Segregation and condensation protein B       28   5.0  
sp|Q8NNN2|MRAY_CORGL  Phospho-N-acetylmuramoyl-pentapeptide-...    28   6.6  
sp|P47906|RMAR_WILMR  Mitochondrial ribosomal protein VAR1         28   6.6  
sp|Q5HZ36|GAT24_ARATH  GATA transcription factor 24                28   8.6  
sp|P33453|RRPL_UUK  RNA-directed RNA polymerase (L protein)        28   8.6  
sp|P40433|6P21_YEAST  6-phosphofructo-2-kinase 1 (Phosphofru...    28   8.6  
sp|Q09949|YSH8_CAEEL  Hypothetical protein F12A10.8 in chrom...    28   8.6  
>sp|Q8BML1|MICA2_MOUSE Protein MICAL-2
          Length = 960

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 27  EGEESPETRSTK-F*NFGDITNCITSTKAKNSQFCIFSILALEFRSVYILLLNQLCLWK* 203
           E E+  + ++++ F NF   T C  + +A N   C+  +  L+ R+ Y  L +++  WK 
Sbjct: 3   ENEDEKQAQASQVFENFVQATTCKGTLQAFNILTCLLDLDPLDHRNFYSQLKSKVNTWKA 62

Query: 204 KLI 212
           K +
Sbjct: 63  KAL 65
>sp|Q9UUJ3|RGA9_SCHPO Probable Rho-GTPase-activating protein 9
          Length = 684

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 294 NYKSNYVSQIHSDIDDNNVQYKLYDQKQSASTSINK 187
           NY  N++  ++S   DN   +K  D  +  ST INK
Sbjct: 378 NYSGNFIPSLNSIFIDNLNSFKNLDSLRDMSTQINK 413
>sp|P57249|SYI_BUCAI Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
          Length = 940

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 321 YNQTSNNDLNYKSNYVSQIHSDIDDNNV 238
           YN  ++N +N+K  Y+S  H  +D  NV
Sbjct: 351 YNIKTSNIVNFKGEYISNTHDKLDGVNV 378
>sp|Q7NB77|SCPB_MYCGA Segregation and condensation protein B
          Length = 291

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -1

Query: 315 QTSNNDLNYKS-----NYVSQIHSDIDDNNVQYKLYDQKQSASTSINKADLKV 172
           +TS+ND  Y+S        S+I  D+D + +    Y+QK+ ++ +I +A L V
Sbjct: 62  ETSDNDKFYESVRDAIEKTSEIVDDLDQSELTKNSYEQKELSAKAIIQAALYV 114
>sp|Q8NNN2|MRAY_CORGL Phospho-N-acetylmuramoyl-pentapeptide-transferase
           (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 366

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 101 GCYAVCDIAEISKLCRSGFWALFSFL 24
           GCY V D  ++S LC +G  A   FL
Sbjct: 228 GCYTVRDPLDLSVLCAAGLGATLGFL 253
>sp|P47906|RMAR_WILMR Mitochondrial ribosomal protein VAR1
          Length = 380

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 339 YHKKFIYNQTSNNDLNYKSNYVSQIHSDIDDNNVQYKLYDQKQSASTSINKADL 178
           Y K    N   NN L+ K+NY++ I   I++NN++Y        ++ S+N  D+
Sbjct: 217 YSKLLRDNIPMNNSLSIKNNYMTNI---INNNNIKY----NNMISNNSLNIKDI 263
>sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24
          Length = 398

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
 Frame = -1

Query: 336 HKKFIYNQTSNND--------LNYKSNYVSQIHSDIDDNNVQYKLYDQKQSASTSINK 187
           + K + +QT+NN+        LN+K+N+    H D++  NV      +K +A+T+ N+
Sbjct: 160 NNKQLIDQTNNNNHKESDHYPLNHKTNFDEDHHEDLNFKNV----LTRKTTAATTENR 213
>sp|P33453|RRPL_UUK RNA-directed RNA polymerase (L protein)
          Length = 2103

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 157  LNSNANIENIQNCEF---LAFVDVMQFVISPKFQNFVDLVSGLSSPSLG 20
            L    +   +  C+F   L    ++   +SP F  ++ LVS +  PSLG
Sbjct: 1238 LEGGGSFSLVSFCQFGQLLLHYTLLGMTVSPLFLEYIKLVSEIKDPSLG 1286
>sp|P40433|6P21_YEAST 6-phosphofructo-2-kinase 1 (Phosphofructokinase 2 I) (6PF-2-K 1)
          Length = 827

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -3

Query: 181 FKSKIYTDLNSNANIENIQNCEFLAFVDVMQFVISPKFQNFV 56
           FKS++   L +   IE+ +N +++  +DV + VI+   Q F+
Sbjct: 340 FKSRLANYLKAYEPIEDDENLQYIKMIDVGKKVIAYNIQGFL 381
>sp|Q09949|YSH8_CAEEL Hypothetical protein F12A10.8 in chromosome II
          Length = 437

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   FSTDVLPKEGEESPETRSTKF*NFGDITNCITSTKAKN 116
           F T  LPK  +ES + + +   +FGD T      + KN
Sbjct: 340 FETSYLPKNADESKKHQKSMLPSFGDYTTKSDDERQKN 377
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,833,534
Number of Sequences: 369166
Number of extensions: 566830
Number of successful extensions: 1809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)