Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_A13
(342 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BML1|MICA2_MOUSE Protein MICAL-2 30 1.7
sp|Q9UUJ3|RGA9_SCHPO Probable Rho-GTPase-activating protein 9 29 3.9
sp|P57249|SYI_BUCAI Isoleucyl-tRNA synthetase (Isoleucine--... 29 3.9
sp|Q7NB77|SCPB_MYCGA Segregation and condensation protein B 28 5.0
sp|Q8NNN2|MRAY_CORGL Phospho-N-acetylmuramoyl-pentapeptide-... 28 6.6
sp|P47906|RMAR_WILMR Mitochondrial ribosomal protein VAR1 28 6.6
sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24 28 8.6
sp|P33453|RRPL_UUK RNA-directed RNA polymerase (L protein) 28 8.6
sp|P40433|6P21_YEAST 6-phosphofructo-2-kinase 1 (Phosphofru... 28 8.6
sp|Q09949|YSH8_CAEEL Hypothetical protein F12A10.8 in chrom... 28 8.6
>sp|Q8BML1|MICA2_MOUSE Protein MICAL-2
Length = 960
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 27 EGEESPETRSTK-F*NFGDITNCITSTKAKNSQFCIFSILALEFRSVYILLLNQLCLWK* 203
E E+ + ++++ F NF T C + +A N C+ + L+ R+ Y L +++ WK
Sbjct: 3 ENEDEKQAQASQVFENFVQATTCKGTLQAFNILTCLLDLDPLDHRNFYSQLKSKVNTWKA 62
Query: 204 KLI 212
K +
Sbjct: 63 KAL 65
>sp|Q9UUJ3|RGA9_SCHPO Probable Rho-GTPase-activating protein 9
Length = 684
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 294 NYKSNYVSQIHSDIDDNNVQYKLYDQKQSASTSINK 187
NY N++ ++S DN +K D + ST INK
Sbjct: 378 NYSGNFIPSLNSIFIDNLNSFKNLDSLRDMSTQINK 413
>sp|P57249|SYI_BUCAI Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
Length = 940
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 321 YNQTSNNDLNYKSNYVSQIHSDIDDNNV 238
YN ++N +N+K Y+S H +D NV
Sbjct: 351 YNIKTSNIVNFKGEYISNTHDKLDGVNV 378
>sp|Q7NB77|SCPB_MYCGA Segregation and condensation protein B
Length = 291
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -1
Query: 315 QTSNNDLNYKS-----NYVSQIHSDIDDNNVQYKLYDQKQSASTSINKADLKV 172
+TS+ND Y+S S+I D+D + + Y+QK+ ++ +I +A L V
Sbjct: 62 ETSDNDKFYESVRDAIEKTSEIVDDLDQSELTKNSYEQKELSAKAIIQAALYV 114
>sp|Q8NNN2|MRAY_CORGL Phospho-N-acetylmuramoyl-pentapeptide-transferase
(UDP-MurNAc-pentapeptide phosphotransferase)
Length = 366
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 101 GCYAVCDIAEISKLCRSGFWALFSFL 24
GCY V D ++S LC +G A FL
Sbjct: 228 GCYTVRDPLDLSVLCAAGLGATLGFL 253
>sp|P47906|RMAR_WILMR Mitochondrial ribosomal protein VAR1
Length = 380
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 339 YHKKFIYNQTSNNDLNYKSNYVSQIHSDIDDNNVQYKLYDQKQSASTSINKADL 178
Y K N NN L+ K+NY++ I I++NN++Y ++ S+N D+
Sbjct: 217 YSKLLRDNIPMNNSLSIKNNYMTNI---INNNNIKY----NNMISNNSLNIKDI 263
>sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24
Length = 398
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = -1
Query: 336 HKKFIYNQTSNND--------LNYKSNYVSQIHSDIDDNNVQYKLYDQKQSASTSINK 187
+ K + +QT+NN+ LN+K+N+ H D++ NV +K +A+T+ N+
Sbjct: 160 NNKQLIDQTNNNNHKESDHYPLNHKTNFDEDHHEDLNFKNV----LTRKTTAATTENR 213
>sp|P33453|RRPL_UUK RNA-directed RNA polymerase (L protein)
Length = 2103
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 157 LNSNANIENIQNCEF---LAFVDVMQFVISPKFQNFVDLVSGLSSPSLG 20
L + + C+F L ++ +SP F ++ LVS + PSLG
Sbjct: 1238 LEGGGSFSLVSFCQFGQLLLHYTLLGMTVSPLFLEYIKLVSEIKDPSLG 1286
>sp|P40433|6P21_YEAST 6-phosphofructo-2-kinase 1 (Phosphofructokinase 2 I) (6PF-2-K 1)
Length = 827
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -3
Query: 181 FKSKIYTDLNSNANIENIQNCEFLAFVDVMQFVISPKFQNFV 56
FKS++ L + IE+ +N +++ +DV + VI+ Q F+
Sbjct: 340 FKSRLANYLKAYEPIEDDENLQYIKMIDVGKKVIAYNIQGFL 381
>sp|Q09949|YSH8_CAEEL Hypothetical protein F12A10.8 in chromosome II
Length = 437
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 3 FSTDVLPKEGEESPETRSTKF*NFGDITNCITSTKAKN 116
F T LPK +ES + + + +FGD T + KN
Sbjct: 340 FETSYLPKNADESKKHQKSMLPSFGDYTTKSDDERQKN 377
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,833,534
Number of Sequences: 369166
Number of extensions: 566830
Number of successful extensions: 1809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1807
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)