Planaria EST Database


DrC_02486

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02486
         (753 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W1W9|PAP21_DROME  PAP21-like protein precursor                99   1e-20
sp|Q9BSG0|PAP21_HUMAN  Protease-associated domain-containing...    98   2e-20
sp|Q9D9N8|PAP21_MOUSE  Protease-associated domain-containing...    98   2e-20
sp|P25152|YWAD_BACSU  Hypothetical peptidase ywaD precursor        47   4e-05
sp|Q9BZQ6|C122_HUMAN  Putative alpha-mannosidase C1orf22           46   1e-04
sp|Q90972|RNF13_CHICK  RING finger protein 13 (C-RZF)              44   4e-04
sp|O54965|RNF13_MOUSE  RING finger protein 13                      44   4e-04
sp|P93026|VSR1_ARATH  Vacuolar sorting receptor 1 precursor ...    44   5e-04
sp|O64758|VSR5_ARATH  Vacuolar sorting receptor 5 precursor ...    43   8e-04
sp|O43567|RNF13_HUMAN  RING finger protein 13                      43   0.001
>sp|Q9W1W9|PAP21_DROME PAP21-like protein precursor
          Length = 196

 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
 Frame = +1

Query: 46  ITSRNNPSDNFYLKIIYPVELQNFYTLSPAK-IGPQFNTTFTNSSLVIAEPEHACINLQN 222
           IT+++  + + + +I+ P EL+  Y L PAK  G  F+       LVI +P  AC  ++N
Sbjct: 26  ITTQDIIAGDVFFEILSPSELEYTYRLRPAKDFGSAFSERLEGVPLVITDPPGACQEIRN 85

Query: 223 SKNMTGKIALVIRGGCSFVLKIINAQLAGAVAVIVYDY---SQLHKRLISMVPDDTGRQV 393
           ++++ G +AL+ RG CSF+ K + A+ AGA+A I+ +Y   S   +  I M+ D++ +  
Sbjct: 86  ARDLNGGVALIDRGECSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQQDA 145

Query: 394 HIPSAFMNGVDGHRISSTLSRINLESATVMFPLNVTGLPLFHHKVITWTLW 546
           +IP+ F+ G +G  I STL R+    A +  P+N+T  P        W  W
Sbjct: 146 NIPAGFLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPPWLGW 196
>sp|Q9BSG0|PAP21_HUMAN Protease-associated domain-containing protein of 21 kDa precursor
           (hPAP21)
          Length = 188

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
 Frame = +1

Query: 70  DNFYLKIIYPVELQNFYTLSPAK-IGPQFNTTFTNSSLVIAEPEHACINLQNSKNMTGKI 246
           D  Y +++ P +++  +T +PAK  G  F+T +    LV AEP  AC  L N   +  +I
Sbjct: 28  DYLYFQVLSPGDIRYIFTATPAKDFGGIFHTRYEQIHLVPAEPPEACGELSNGFFIQDQI 87

Query: 247 ALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRL-ISMVPDDTGRQVHIPSAFMNGV 423
           ALV RGGCSF+ K    Q  G  AVI+ D +  +    + M+ D T R   IP+ F+ G 
Sbjct: 88  ALVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGR 147

Query: 424 DGHRISSTLSRINLESATVMFPLNVTGLPLFHHKVITWTLW 546
           DG+ I  +L +  L  A +  P+NVT +P F      WT W
Sbjct: 148 DGYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPPWTFW 188
>sp|Q9D9N8|PAP21_MOUSE Protease-associated domain-containing protein of 21 kDa precursor
          Length = 188

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
 Frame = +1

Query: 70  DNFYLKIIYPVELQNFYTLSPAK-IGPQFNTTFTNSSLVIAEPEHACINLQNSKNMTGKI 246
           D  Y +++ P +++  +T +PAK  G  F+T +    LV AEP  AC  L N   +  +I
Sbjct: 28  DYLYFQVLSPGDIRYIFTATPAKDFGGIFHTRYEQIHLVPAEPPEACGELSNGFFIQDQI 87

Query: 247 ALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRL-ISMVPDDTGRQVHIPSAFMNGV 423
           ALV RGGCSF+ K    Q  G  AVI+ D +  +    + M+ D T R   IP+ F+ G 
Sbjct: 88  ALVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGR 147

Query: 424 DGHRISSTLSRINLESATVMFPLNVTGLPLFHHKVITWTLW 546
           DG+ I  +L +  L  A +  P+NVT +P F      WT W
Sbjct: 148 DGYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPPWTFW 188
>sp|P25152|YWAD_BACSU Hypothetical peptidase ywaD precursor
          Length = 455

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
 Frame = +1

Query: 238 GKIALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRLISMVPDDTGRQVHIPSAFMN 417
           GKIAL+ RG  ++  K  NA+ AGA AVI+Y+  +    L+ M P+ +G +V IP   + 
Sbjct: 146 GKIALISRGDLTYYEKAKNAEAAGAKAVIIYNNKE---SLVPMTPNLSGNKVGIPVVGIK 202

Query: 418 GVDGHRISSTL-SRINLESATVMFPLNVTGL 507
             DG  ++    + + L++ T     N+ G+
Sbjct: 203 KEDGEALTQQKEATLKLKAFTNQTSQNIIGI 233
>sp|Q9BZQ6|C122_HUMAN Putative alpha-mannosidase C1orf22
          Length = 889

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 121 TLSPAKIGPQFNT-TFTNSSLVIAEPEHACINLQNSKNMTGKIALVIRGGCSFVLKIINA 297
           T  PA+ G   +    T   +  ++P + C  L N + + GKIAL+ RG C F  K  N 
Sbjct: 621 TAGPAQFGLDLSKHKETRGFVASSKPSNGCSELTNPEAVMGKIALIQRGQCMFAEKARNI 680

Query: 298 QLAGAVAVIVYD 333
           Q AGA+  IV D
Sbjct: 681 QNAGAIGGIVID 692
>sp|Q90972|RNF13_CHICK RING finger protein 13 (C-RZF)
          Length = 381

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
 Frame = +1

Query: 130 PAKIGPQFNTTFTNSSLVIAEPEHACINLQ----NSKNMTGKIALVIRGGCSFVLKIINA 297
           PA+ G +         L+ ++PE+AC  +        + T  I L+ R  C+F +K++NA
Sbjct: 52  PARFGYRLPAEGLKGFLINSKPENACEPIAPPPLRDNSSTAFIVLIRRLECNFDIKVLNA 111

Query: 298 QLAGAVAVIVYDYSQLHKRLISMVPDDTG--RQVHIPSAFM 414
           Q AG  A IV++       LISM  +D    +++ IPS F+
Sbjct: 112 QRAGYKAAIVHNVDS--DDLISMGSNDIEILKKIDIPSVFI 150
>sp|O54965|RNF13_MOUSE RING finger protein 13
          Length = 381

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
 Frame = +1

Query: 130 PAKIGPQFNTTFTNSSLVIAEPEHAC---INLQNSKNMTGK-IALVIRGGCSFVLKIINA 297
           PA+ G +         L+ ++PE+AC   +      N +G  I L+ R  C+F +K++NA
Sbjct: 52  PARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNA 111

Query: 298 QLAGAVAVIVYDYSQLHKRLISMVPD--DTGRQVHIPSAFM 414
           Q AG  A IV++       LISM  +  DT +++ IPS F+
Sbjct: 112 QRAGYKAAIVHNVDS--DDLISMGSNDIDTLKKIDIPSVFI 150
>sp|P93026|VSR1_ARATH Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth
           factor receptor-like protein 1) (AtELP1) (AtELP)
           (BP80-like protein b) (AtBP80b) (Spot 3 protein)
          Length = 623

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
 Frame = +1

Query: 82  LKIIYPVELQNFYTLSPAKIG-PQFNTTFTNSSLVIAEPEHAC-------INLQNSKNMT 237
           LK+  P  ++  Y  +    G PQ+  T   + +     + AC       I+ ++     
Sbjct: 28  LKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRL 87

Query: 238 GKIALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRLISMVPD------DTGRQVHI 399
               L+ RG C F LK   AQ AGA A++V D S+    +    P+      D  + + I
Sbjct: 88  PTFVLIDRGDCYFTLKAWIAQQAGAAAILVAD-SKAEPLITMDTPEEDKSDADYLQNITI 146

Query: 400 PSAFMNGVDGHRISSTLS 453
           PSA +    G  I S LS
Sbjct: 147 PSALITKTLGDSIKSALS 164
>sp|O64758|VSR5_ARATH Vacuolar sorting receptor 5 precursor (AtVSR5) (Epidermal growth
           factor receptor-like protein 5) (AtELP5) (BP80-like
           protein e) (AtBP80e)
          Length = 618

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
 Frame = +1

Query: 145 PQFNTTFTNSSLVIAEPEHACINLQ---NSKNMTGKIALVIRGGCSFVLKIINAQLAGAV 315
           P++      S +   +  + C +     N+K+   KI L+ RG C+F LKI N Q +GA 
Sbjct: 57  PKYGGFMIGSVVYAGQDAYGCNSFNKTFNTKSPYPKILLIDRGVCNFALKIWNGQQSGAA 116

Query: 316 AVIVYDYSQLHKRLISM-VPDDTG----RQVHIPSAFMNGVDGHRISSTLSR 456
           AV++ D   + + LI+M  P D       +V IPSA +    G  +   L R
Sbjct: 117 AVLLAD--NIVEPLITMDTPQDEDPDFIDKVKIPSALILRSFGDSLKKALKR 166
>sp|O43567|RNF13_HUMAN RING finger protein 13
          Length = 381

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
 Frame = +1

Query: 130 PAKIGPQFNTTFTNSSLVIAEPEHAC---INLQNSKNMTGK-IALVIRGGCSFVLKIINA 297
           PA+ G +         L+ ++PE+AC   +      N +G  I L+ R  C+F +K++NA
Sbjct: 52  PARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNA 111

Query: 298 QLAGAVAVIVYDYSQLHKRLISMVPDDTG--RQVHIPSAFM 414
           Q AG  A IV++       LISM  +D    +++ IPS F+
Sbjct: 112 QRAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFI 150
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,156,983
Number of Sequences: 369166
Number of extensions: 1599005
Number of successful extensions: 3653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3646
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)