Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P14
(753 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9W1W9|PAP21_DROME PAP21-like protein precursor 99 1e-20
sp|Q9BSG0|PAP21_HUMAN Protease-associated domain-containing... 98 2e-20
sp|Q9D9N8|PAP21_MOUSE Protease-associated domain-containing... 98 2e-20
sp|P25152|YWAD_BACSU Hypothetical peptidase ywaD precursor 47 4e-05
sp|Q9BZQ6|C122_HUMAN Putative alpha-mannosidase C1orf22 46 1e-04
sp|Q90972|RNF13_CHICK RING finger protein 13 (C-RZF) 44 4e-04
sp|O54965|RNF13_MOUSE RING finger protein 13 44 4e-04
sp|P93026|VSR1_ARATH Vacuolar sorting receptor 1 precursor ... 44 5e-04
sp|O64758|VSR5_ARATH Vacuolar sorting receptor 5 precursor ... 43 8e-04
sp|O43567|RNF13_HUMAN RING finger protein 13 43 0.001
>sp|Q9W1W9|PAP21_DROME PAP21-like protein precursor
Length = 196
Score = 99.0 bits (245), Expect = 1e-20
Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Frame = +1
Query: 46 ITSRNNPSDNFYLKIIYPVELQNFYTLSPAK-IGPQFNTTFTNSSLVIAEPEHACINLQN 222
IT+++ + + + +I+ P EL+ Y L PAK G F+ LVI +P AC ++N
Sbjct: 26 ITTQDIIAGDVFFEILSPSELEYTYRLRPAKDFGSAFSERLEGVPLVITDPPGACQEIRN 85
Query: 223 SKNMTGKIALVIRGGCSFVLKIINAQLAGAVAVIVYDY---SQLHKRLISMVPDDTGRQV 393
++++ G +AL+ RG CSF+ K + A+ AGA+A I+ +Y S + I M+ D++ +
Sbjct: 86 ARDLNGGVALIDRGECSFLTKTLRAEAAGALAAIITEYNPSSPEFEHYIEMIHDNSQQDA 145
Query: 394 HIPSAFMNGVDGHRISSTLSRINLESATVMFPLNVTGLPLFHHKVITWTLW 546
+IP+ F+ G +G I STL R+ A + P+N+T P W W
Sbjct: 146 NIPAGFLLGKNGVIIRSTLQRLKRVHALINIPVNLTFTPPSKINHPPWLGW 196
>sp|Q9BSG0|PAP21_HUMAN Protease-associated domain-containing protein of 21 kDa precursor
(hPAP21)
Length = 188
Score = 98.2 bits (243), Expect = 2e-20
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Frame = +1
Query: 70 DNFYLKIIYPVELQNFYTLSPAK-IGPQFNTTFTNSSLVIAEPEHACINLQNSKNMTGKI 246
D Y +++ P +++ +T +PAK G F+T + LV AEP AC L N + +I
Sbjct: 28 DYLYFQVLSPGDIRYIFTATPAKDFGGIFHTRYEQIHLVPAEPPEACGELSNGFFIQDQI 87
Query: 247 ALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRL-ISMVPDDTGRQVHIPSAFMNGV 423
ALV RGGCSF+ K Q G AVI+ D + + + M+ D T R IP+ F+ G
Sbjct: 88 ALVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGR 147
Query: 424 DGHRISSTLSRINLESATVMFPLNVTGLPLFHHKVITWTLW 546
DG+ I +L + L A + P+NVT +P F WT W
Sbjct: 148 DGYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPPWTFW 188
>sp|Q9D9N8|PAP21_MOUSE Protease-associated domain-containing protein of 21 kDa precursor
Length = 188
Score = 98.2 bits (243), Expect = 2e-20
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Frame = +1
Query: 70 DNFYLKIIYPVELQNFYTLSPAK-IGPQFNTTFTNSSLVIAEPEHACINLQNSKNMTGKI 246
D Y +++ P +++ +T +PAK G F+T + LV AEP AC L N + +I
Sbjct: 28 DYLYFQVLSPGDIRYIFTATPAKDFGGIFHTRYEQIHLVPAEPPEACGELSNGFFIQDQI 87
Query: 247 ALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRL-ISMVPDDTGRQVHIPSAFMNGV 423
ALV RGGCSF+ K Q G AVI+ D + + + M+ D T R IP+ F+ G
Sbjct: 88 ALVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEMIQDSTQRTADIPALFLLGR 147
Query: 424 DGHRISSTLSRINLESATVMFPLNVTGLPLFHHKVITWTLW 546
DG+ I +L + L A + P+NVT +P F WT W
Sbjct: 148 DGYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPPWTFW 188
>sp|P25152|YWAD_BACSU Hypothetical peptidase ywaD precursor
Length = 455
Score = 47.4 bits (111), Expect = 4e-05
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 238 GKIALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRLISMVPDDTGRQVHIPSAFMN 417
GKIAL+ RG ++ K NA+ AGA AVI+Y+ + L+ M P+ +G +V IP +
Sbjct: 146 GKIALISRGDLTYYEKAKNAEAAGAKAVIIYNNKE---SLVPMTPNLSGNKVGIPVVGIK 202
Query: 418 GVDGHRISSTL-SRINLESATVMFPLNVTGL 507
DG ++ + + L++ T N+ G+
Sbjct: 203 KEDGEALTQQKEATLKLKAFTNQTSQNIIGI 233
>sp|Q9BZQ6|C122_HUMAN Putative alpha-mannosidase C1orf22
Length = 889
Score = 45.8 bits (107), Expect = 1e-04
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 121 TLSPAKIGPQFNT-TFTNSSLVIAEPEHACINLQNSKNMTGKIALVIRGGCSFVLKIINA 297
T PA+ G + T + ++P + C L N + + GKIAL+ RG C F K N
Sbjct: 621 TAGPAQFGLDLSKHKETRGFVASSKPSNGCSELTNPEAVMGKIALIQRGQCMFAEKARNI 680
Query: 298 QLAGAVAVIVYD 333
Q AGA+ IV D
Sbjct: 681 QNAGAIGGIVID 692
>sp|Q90972|RNF13_CHICK RING finger protein 13 (C-RZF)
Length = 381
Score = 44.3 bits (103), Expect = 4e-04
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Frame = +1
Query: 130 PAKIGPQFNTTFTNSSLVIAEPEHACINLQ----NSKNMTGKIALVIRGGCSFVLKIINA 297
PA+ G + L+ ++PE+AC + + T I L+ R C+F +K++NA
Sbjct: 52 PARFGYRLPAEGLKGFLINSKPENACEPIAPPPLRDNSSTAFIVLIRRLECNFDIKVLNA 111
Query: 298 QLAGAVAVIVYDYSQLHKRLISMVPDDTG--RQVHIPSAFM 414
Q AG A IV++ LISM +D +++ IPS F+
Sbjct: 112 QRAGYKAAIVHNVDS--DDLISMGSNDIEILKKIDIPSVFI 150
>sp|O54965|RNF13_MOUSE RING finger protein 13
Length = 381
Score = 44.3 bits (103), Expect = 4e-04
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Frame = +1
Query: 130 PAKIGPQFNTTFTNSSLVIAEPEHAC---INLQNSKNMTGK-IALVIRGGCSFVLKIINA 297
PA+ G + L+ ++PE+AC + N +G I L+ R C+F +K++NA
Sbjct: 52 PARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNA 111
Query: 298 QLAGAVAVIVYDYSQLHKRLISMVPD--DTGRQVHIPSAFM 414
Q AG A IV++ LISM + DT +++ IPS F+
Sbjct: 112 QRAGYKAAIVHNVDS--DDLISMGSNDIDTLKKIDIPSVFI 150
>sp|P93026|VSR1_ARATH Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth
factor receptor-like protein 1) (AtELP1) (AtELP)
(BP80-like protein b) (AtBP80b) (Spot 3 protein)
Length = 623
Score = 43.9 bits (102), Expect = 5e-04
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Frame = +1
Query: 82 LKIIYPVELQNFYTLSPAKIG-PQFNTTFTNSSLVIAEPEHAC-------INLQNSKNMT 237
LK+ P ++ Y + G PQ+ T + + + AC I+ ++
Sbjct: 28 LKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRL 87
Query: 238 GKIALVIRGGCSFVLKIINAQLAGAVAVIVYDYSQLHKRLISMVPD------DTGRQVHI 399
L+ RG C F LK AQ AGA A++V D S+ + P+ D + + I
Sbjct: 88 PTFVLIDRGDCYFTLKAWIAQQAGAAAILVAD-SKAEPLITMDTPEEDKSDADYLQNITI 146
Query: 400 PSAFMNGVDGHRISSTLS 453
PSA + G I S LS
Sbjct: 147 PSALITKTLGDSIKSALS 164
>sp|O64758|VSR5_ARATH Vacuolar sorting receptor 5 precursor (AtVSR5) (Epidermal growth
factor receptor-like protein 5) (AtELP5) (BP80-like
protein e) (AtBP80e)
Length = 618
Score = 43.1 bits (100), Expect = 8e-04
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +1
Query: 145 PQFNTTFTNSSLVIAEPEHACINLQ---NSKNMTGKIALVIRGGCSFVLKIINAQLAGAV 315
P++ S + + + C + N+K+ KI L+ RG C+F LKI N Q +GA
Sbjct: 57 PKYGGFMIGSVVYAGQDAYGCNSFNKTFNTKSPYPKILLIDRGVCNFALKIWNGQQSGAA 116
Query: 316 AVIVYDYSQLHKRLISM-VPDDTG----RQVHIPSAFMNGVDGHRISSTLSR 456
AV++ D + + LI+M P D +V IPSA + G + L R
Sbjct: 117 AVLLAD--NIVEPLITMDTPQDEDPDFIDKVKIPSALILRSFGDSLKKALKR 166
>sp|O43567|RNF13_HUMAN RING finger protein 13
Length = 381
Score = 42.7 bits (99), Expect = 0.001
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Frame = +1
Query: 130 PAKIGPQFNTTFTNSSLVIAEPEHAC---INLQNSKNMTGK-IALVIRGGCSFVLKIINA 297
PA+ G + L+ ++PE+AC + N +G I L+ R C+F +K++NA
Sbjct: 52 PARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNA 111
Query: 298 QLAGAVAVIVYDYSQLHKRLISMVPDDTG--RQVHIPSAFM 414
Q AG A IV++ LISM +D +++ IPS F+
Sbjct: 112 QRAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFI 150
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,156,983
Number of Sequences: 369166
Number of extensions: 1599005
Number of successful extensions: 3653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3646
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)